Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor

The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor

(2011) Eva Waldvogel et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The dynamic architecture of the metabolic switch in Streptomyces coelicolor

(2010) Kay Nieselt et al.   BMC GENOMICS

Engineering of regulatory cascades and networks controlling antibiotic biosynthesis in Streptomyces

(2010) Juan-Francisco Martín et al.   CURRENT OPINION IN MICROBIOLOGY

The  R regulon of Streptomyces coelicolor A3(2) reveals a key role in protein quality control during disulphide stress

(2010) D. Kallifidas et al.   MICROBIOLOGY-SGM

Damped oscillations in the adaptive response of the iron homeostasis network ofE. coli

(2010) Amnon Amir et al.   MOLECULAR MICROBIOLOGY

Model-based method for transcription factor target identification with limited data

(2010) Antti Honkela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting functionality of protein-DNA interactions by integrating diverse evidence

(2009) D. Ucar et al.   BIOINFORMATICS

Phosphate control over nitrogen metabolism in Streptomyces coelicolor: direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP

(2009) Antonio Rodríguez-García et al.   NUCLEIC ACIDS RESEARCH

Phosphinothricin-tripeptide biosynthesis: An original version of bacterial secondary metabolism?

(2009) Eva Schinko et al.   PHYTOCHEMISTRY

BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments

(2008) Claudia Angelini et al.   BMC BIOINFORMATICS

SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics

(2008) Fabrice Touzain et al.   BMC BIOINFORMATICS

Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)

(2008) Wei Lian et al.   BMC GENOMICS

Feast or famine: the global regulator DasR links nutrient stress to antibiotic production by Streptomyces

(2008) Sébastien Rigali et al.   EMBO REPORTS

Target genes and structure of the direct repeats in the DNA-binding sequences of the response regulator PhoP in Streptomyces coelicolor

(2008) Alberto Sola-Landa et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH