CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

The Genome Portal of the Department of Energy Joint Genome Institute

(2011) I. V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Fungal Secretome Database: Integrated platform for annotation of fungal secretomes

(2010) Jaeyoung Choi et al.   BMC GENOMICS

Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing

(2010) B. Park et al.   NUCLEIC ACIDS RESEARCH

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes

(2009) Wonhoon Lee et al.   BMC GENOMICS

Phylogeny of the CDC25 homology domain reveals rapid differentiation of Ras pathways between early animals and fungi

(2009) Teunis J.P. van Dam et al.   CELLULAR SIGNALLING

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi

(2009) T. A. Richards et al.   PLANT CELL

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

(2008) J. Park et al.   BIOINFORMATICS

SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

(2008) Kyongyong Jung et al.   BMC GENOMICS

Fungal cytochrome P450 database

(2008) Jongsun Park et al.   BMC GENOMICS

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry

(2008) H. Xi et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH