GENIES: gene network inference engine based on supervised analysis

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Network-based function prediction and interactomics: The case for metabolic enzymes

(2010) S.C. Janga et al.   METABOLIC ENGINEERING

PathPred: an enzyme-catalyzed metabolic pathway prediction server

(2010) Y. Moriya et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

(2009) Y. Yamanishi et al.   BIOINFORMATICS

Protein function prediction – the power of multiplicity

(2009) Robert Rentzsch et al.   TRENDS IN BIOTECHNOLOGY

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

(2009) Pingzhao Hu et al.   PLOS BIOLOGY