O-miner: an integrative platform for automated analysis and mining of -omics data

Tumor suppressor genes FHIT and WWOX are deleted in primary effusion lymphoma (PEL) cell lines

(2011) D. Roy et al.   BLOOD

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Algorithm-driven Artifacts in median polish summarization of Microarray data

(2010) Federico M Giorgi et al.   BMC BIOINFORMATICS

waviCGH: a web application for the analysis and visualization of genomic copy number alterations

(2010) Angel Carro et al.   NUCLEIC ACIDS RESEARCH

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions

(2009) O. M. Rueda et al.   BIOINFORMATICS

Networking of differentially expressed genes in human cancer cells resistant to methotrexate

(2009) Elisabet Selga et al.   Genome Medicine

Power enhancement via multivariate outlier testing with gene expression arrays

(2008) A. L. Asare et al.   BIOINFORMATICS

CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms

(2008) W. Lai et al.   BIOINFORMATICS

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

Estimation and assessment of raw copy numbers at the single locus level

(2008) H. Bengtsson et al.   BIOINFORMATICS

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

(2008) E. Wingender   BRIEFINGS IN BIOINFORMATICS

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH