The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences

RSAT 2011: regulatory sequence analysis tools

(2011) M. Thomas-Chollier et al.   NUCLEIC ACIDS RESEARCH

The value of position-specific priors in motif discovery using MEME

(2010) Timothy L Bailey et al.   BMC BIOINFORMATICS

Finding regulatory DNA motifs using alignment-free evolutionary conservation information

(2010) Raluca Gordân et al.   NUCLEIC ACIDS RESEARCH

Evidence-ranked motif identification

(2010) Stoyan Georgiev et al.   GENOME BIOLOGY

RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways

(2009) Deepak Sharma et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets

(2008) C. Linhart et al.   GENOME RESEARCH

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology