Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site

Structure and mechanical properties of the ribosomal L1 stalk three-way junction

(2012) Kamila Réblová et al.   NUCLEIC ACIDS RESEARCH

In silico analysis of IRES RNAs of foot-and-mouth disease virus and related picornaviruses

(2011) Jody M. Burks et al.   ARCHIVES OF VIROLOGY

Computational approaches to RNA structure prediction, analysis, and design

(2011) Christian Laing et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs

(2011) Ilyas Yildirim et al.   Journal of Chemical Theory and Computation

Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles

(2011) Marie Zgarbová et al.   Journal of Chemical Theory and Computation

Predicting coaxial helical stacking in RNA junctions

(2011) Christian Laing et al.   NUCLEIC ACIDS RESEARCH

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation

(2011) Noemí Fernández et al.   NUCLEIC ACIDS RESEARCH

ModeRNA: a tool for comparative modeling of RNA 3D structure

(2011) Magdalena Rother et al.   NUCLEIC ACIDS RESEARCH

Biomolecular modeling and simulation: a field coming of age

(2011) Tamar Schlick et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H+Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme

(2010) Vojtěch Mlýnský et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Computational approaches to 3D modeling of RNA

(2010) Christian Laing et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Topology Links RNA Secondary Structure with Global Conformation, Dynamics, and Adaptation

(2010) M. H. Bailor et al.   SCIENCE

Structural analysis provides insights into the modular organization of picornavirus IRES

(2010) Noemí Fernández et al.   VIROLOGY

Analysis of Four-Way Junctions in RNA Structures

(2009) Christian Laing et al.   JOURNAL OF MOLECULAR BIOLOGY

Tertiary Motifs Revealed in Analyses of Higher-Order RNA Junctions

(2009) Christian Laing et al.   JOURNAL OF MOLECULAR BIOLOGY

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

(2009) M. A. Jonikas et al.   RNA

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

RNALogo: a new approach to display structural RNA alignment

(2008) Tzu-Hao Chang et al.   NUCLEIC ACIDS RESEARCH

A novel role for Gemin5 in mRNA translation

(2008) Almudena Pacheco et al.   NUCLEIC ACIDS RESEARCH

The impact of RNA structure on picornavirus IRES activity

(2008) Encarnación Martínez-Salas   TRENDS IN MICROBIOLOGY