Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes

RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures

(2011) P. L. Vanegas et al.   NUCLEIC ACIDS RESEARCH

WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs

(2011) A. I. Petrov et al.   NUCLEIC ACIDS RESEARCH

Shape, flexibility and packing of proteins and nucleic acids in complexes

(2011) Nidhi Rawat et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

(2010) Andreas H. Ratje et al.   NATURE

Crystal Structure of the Eukaryotic Ribosome

(2010) A. Ben-Shem et al.   SCIENCE

VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity

(2010) Brian Y. Chen et al.   PLoS Computational Biology

Constraint counting on RNA structures: Linking flexibility and function

(2009) Simone Fulle et al.   METHODS

New metrics for comparing and assessing discrepancies between RNA 3D structures and models

(2009) M. Parisien et al.   RNA

Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome

(2009) Wayne Huggins et al.   BMC STRUCTURAL BIOLOGY

Analyzing the Flexibility of RNA Structures by Constraint Counting

(2008) Simone Fulle et al.   BIOPHYSICAL JOURNAL

Dissecting protein–RNA recognition sites

(2008) Ranjit Prasad Bahadur et al.   NUCLEIC ACIDS RESEARCH

Voronoia: analyzing packing in protein structures

(2008) K. Rother et al.   NUCLEIC ACIDS RESEARCH

Hydrogen-Bonding and Packing Features of Membrane Proteins: Functional Implications

(2007) Peter Werner Hildebrand et al.   BIOPHYSICAL JOURNAL