VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

(2010) P. Rocca-Serra et al.   BIOINFORMATICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins

(2010) Robert M Waterhouse et al.   BMC GENOMICS

Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase

(2010) P. Topalis et al.   INSECT MOLECULAR BIOLOGY

IDOMAL: an ontology for malaria

(2010) Pantelis Topalis et al.   MALARIA JOURNAL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

(2010) A. Bombarely et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2010) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics

(2010) P. Arensburger et al.   SCIENCE

Widespread Divergence Between Incipient Anopheles gambiae Species Revealed by Whole Genome Sequences

(2010) M. K. N. Lawniczak et al.   SCIENCE

SNP Genotyping Defines Complex Gene-Flow Boundaries Among African Malaria Vector Mosquitoes

(2010) D. E. Neafsey et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

EuPathDB: a portal to eukaryotic pathogen databases

(2009) Cristina Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

MIRO and IRbase: IT Tools for the Epidemiological Monitoring of Insecticide Resistance in Mosquito Disease Vectors

(2009) Emmanuel Dialynas et al.   PLoS Neglected Tropical Diseases

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

VectorBase: a data resource for invertebrate vector genomics

(2008) D. Lawson et al.   NUCLEIC ACIDS RESEARCH

How can ontologies help vector biology?

(2008) Pantelis Topalis et al.   TRENDS IN PARASITOLOGY