CLICK—topology-independent comparison of biomolecular 3D structures

DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins

(2011) Kuan Pern Tan et al.   NUCLEIC ACIDS RESEARCH

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

SARA: a server for function annotation of RNA structures

(2009) E. Capriotti et al.   NUCLEIC ACIDS RESEARCH

Alignment of multiple protein structures based on sequence and structure features

(2009) M.S. Madhusudhan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

(2009) Alberto Pascual-García et al.   PLoS Computational Biology

Structural search and retrieval using a tableau representation of protein folding patterns

(2008) Arun S. Konagurthu et al.   BIOINFORMATICS

Protein structure alignment considering phenotypic plasticity

(2008) G. Csaba et al.   BIOINFORMATICS

RNA structure alignment by a unit-vector approach

(2008) E. Capriotti et al.   BIOINFORMATICS

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model

(2008) Mallika Veeramalai et al.   BMC BIOINFORMATICS

Architectures and Functional Coverage of Protein–Protein Interfaces

(2008) Nurcan Tuncbag et al.   JOURNAL OF MOLECULAR BIOLOGY

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

(2008) A. L. Cuff et al.   NUCLEIC ACIDS RESEARCH

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE