Predicting the strength of UP-elements and full-length E. coli σE promoters

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’

(2010) Alvin Tamsir et al.   NATURE

Microbial production of fatty-acid-derived fuels and chemicals from plant biomass

(2010) Eric J. Steen et al.   NATURE

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor,  E

(2010) V. A. Rhodius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Promoter recognition by bacterial alternative   factors: the price of high selectivity?

(2009) A. Feklistov et al.   GENES & DEVELOPMENT

Reduced capacity of alternative  s to melt promoters ensures stringent promoter recognition

(2009) B.-M. Koo et al.   GENES & DEVELOPMENT

Promoter Strength Properties of the Complete Sigma E Regulon of Escherichia coli and Salmonella enterica

(2009) V. K. Mutalik et al.   JOURNAL OF BACTERIOLOGY

The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family

(2009) Anna Staroń et al.   MOLECULAR MICROBIOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

The transcription unit architecture of the Escherichia coli genome

(2009) Byung-Kwan Cho et al.   NATURE BIOTECHNOLOGY

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Toward scalable parts families for predictable design of biological circuits

(2008) Julius B Lucks et al.   CURRENT OPINION IN MICROBIOLOGY

Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

(2008) Lisa A. Schroeder et al.   JOURNAL OF MOLECULAR BIOLOGY