BlastR—fast and accurate database searches for non-coding RNAs

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Relative mutation rates of each nucleotide for another estimated from allele frequency spectra at human gene loci

(2009) LEEYOUNG PARK   Genetics Research

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Sequence context-specific profiles for homology searching

(2009) A. Biegert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The tedious task of finding homologous noncoding RNA genes

(2009) P. Menzel et al.   RNA

Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities

(2008) Usman Roshan et al.   BMC BIOINFORMATICS

Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues

(2008) Yue Lu et al.   NUCLEIC ACIDS RESEARCH