Biological insights from topology independent comparison of protein 3D structures

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

ABC transporters: the power to change

(2009) Douglas C. Rees et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

SARA: a server for function annotation of RNA structures

(2009) E. Capriotti et al.   NUCLEIC ACIDS RESEARCH

Alignment of multiple protein structures based on sequence and structure features

(2009) M.S. Madhusudhan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

(2009) Alberto Pascual-García et al.   PLoS Computational Biology

Structural search and retrieval using a tableau representation of protein folding patterns

(2008) Arun S. Konagurthu et al.   BIOINFORMATICS

Protein structure alignment considering phenotypic plasticity

(2008) G. Csaba et al.   BIOINFORMATICS

RNA structure alignment by a unit-vector approach

(2008) E. Capriotti et al.   BIOINFORMATICS

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model

(2008) Mallika Veeramalai et al.   BMC BIOINFORMATICS

Architectures and Functional Coverage of Protein–Protein Interfaces

(2008) Nurcan Tuncbag et al.   JOURNAL OF MOLECULAR BIOLOGY

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

(2008) A. L. Cuff et al.   NUCLEIC ACIDS RESEARCH

Novel protein folds and their nonsequential structural analogs

(2008) Aysam Guerler et al.   PROTEIN SCIENCE

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE