BriX: a database of protein building blocks for structural analysis, modeling and design

Structural alphabets derived from attractors in conformational space

(2010) Alessandro Pandini et al.   BMC BIOINFORMATICS

FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately

(2010) Inbal Budowski-Tal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome-wide Substrate Analysis Indicates Substrate Exclusion as a Mechanism to Generate Caspase-7VersusCaspase-3 Specificity

(2009) Dieter Demon et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry

(2009) Donald S. Berkholz et al.   NUCLEIC ACIDS RESEARCH

PepX: a structural database of non-redundant protein–peptide complexes

(2009) Peter Vanhee et al.   NUCLEIC ACIDS RESEARCH

Nature of the protein universe

(2009) M. Levitt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new prediction strategy for long local protein structures using an original description

(2009) Aurélie Bornot et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds

(2009) Peter Vanhee et al.   STRUCTURE

Structural Alphabets for Protein Structure Classification: A Comparison Study

(2008) Quan Le et al.   JOURNAL OF MOLECULAR BIOLOGY

Protein segment finder: an online search engine for segment motifs in the PDB

(2008) A. O. Samson et al.   NUCLEIC ACIDS RESEARCH

Constructing templates for protein structure prediction by simulation of protein folding pathways

(2008) Ilona Kifer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments

(2008) Lies Baeten et al.   PLoS Computational Biology