Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing

Folic acid and sodium butyrate prevent tumorigenesis in a mouse model of colorectal cancer

(2010) Rong Lu et al.   Epigenetics

CHO gene expression profiling in biopharmaceutical process analysis and design

(2009) Jochen Schaub et al.   BIOTECHNOLOGY AND BIOENGINEERING

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

(2009) L. W. Hillier et al.   GENOME RESEARCH

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

(2009) K. J. McKernan et al.   GENOME RESEARCH

Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment

(2009) Anne Kantardjieff et al.   JOURNAL OF BIOTECHNOLOGY

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray

(2008) Joon Chong Yee et al.   BIOTECHNOLOGY AND BIOENGINEERING

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

What would you do if you could sequence everything?

(2008) Avak Kahvejian et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE

Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment

(2007) Joon Chong Yee et al.   BIOTECHNOLOGY AND BIOENGINEERING