The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture

Genome architecture and the role of transcription

(2010) Argyris Papantonis et al.   CURRENT OPINION IN CELL BIOLOGY

Poised Transcription Factories Prime Silent uPA Gene Prior to Activation

(2010) Carmelo Ferrai et al.   PLOS BIOLOGY

Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts

(2010) Ishita S Mehta et al.   GENOME BIOLOGY

Thermodynamic Pathways to Genome Spatial Organization in the Cell Nucleus

(2009) Mario Nicodemi et al.   BIOPHYSICAL JOURNAL

The Nucleus Inside Out—Through a Rod Darkly

(2009) Tobias Ragoczy et al.   CELL

Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution

(2009) Irina Solovei et al.   CELL

CCCTC-binding factor: to loop or to bridge

(2009) J. Zlatanova et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Interaction between the inner nuclear membrane lamin B receptor and the heterochromatic methyl binding protein, MeCP2

(2009) Alessia Guarda et al.   EXPERIMENTAL CELL RESEARCH

Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

(2009) C. Morey et al.   GENOME RESEARCH

Entropic organization of interphase chromosomes

(2009) Peter R. Cook et al.   JOURNAL OF CELL BIOLOGY

Effect of knotting on polymer shapes and their enveloping ellipsoids

(2009) Kenneth C. Millett et al.   JOURNAL OF CHEMICAL PHYSICS

Dimension of ring polymers in bulk studied by Monte-Carlo simulation and self-consistent theory

(2009) Jiro Suzuki et al.   JOURNAL OF CHEMICAL PHYSICS

A Model for all Genomes: The Role of Transcription Factories

(2009) Peter R. Cook   JOURNAL OF MOLECULAR BIOLOGY

Linking probabilities of off-lattice self-avoiding polygons and the effects of excluded volume

(2009) Naomi Hirayama et al.   Journal of Physics A-Mathematical and Theoretical

Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei

(2009) S. de Nooijer et al.   NUCLEIC ACIDS RESEARCH

Topological origins of chromosomal territories

(2009) Julien Dorier et al.   NUCLEIC ACIDS RESEARCH

Spatially confined folding of chromatin in the interphase nucleus

(2009) J. Mateos-Langerak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

The Meaning of Gene Positioning

(2008) Takumi Takizawa et al.   CELL

Topological effect in ring polymers investigated with Monte Carlo simulation

(2008) Jiro Suzuki et al.   JOURNAL OF CHEMICAL PHYSICS

Effect of Knotting on the Shape of Polymers

(2008) Eric J. Rawdon et al.   MACROMOLECULES

DNA supercoiling inhibits DNA knotting

(2008) Y. Burnier et al.   NUCLEIC ACIDS RESEARCH

Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription

(2008) Robert-Jan Palstra et al.   PLoS One

Structure and Dynamics of Interphase Chromosomes

(2008) Angelo Rosa et al.   PLoS Computational Biology