deconSTRUCT: general purpose protein database search on the substructure level

Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity

(2010) Zong Zhang et al.   BMC BIOINFORMATICS

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

(2010) Mark Gerstein et al.   PROTEIN SCIENCE

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The SALAMI protein structure search server

(2009) T. Margraf et al.   NUCLEIC ACIDS RESEARCH

iSARST: an integrated SARST web server for rapid protein structural similarity searches

(2009) Wei-Cheng Lo et al.   NUCLEIC ACIDS RESEARCH

ProSMoS server: a pattern-based search using interaction matrix representation of protein structures

(2009) S. Shi et al.   NUCLEIC ACIDS RESEARCH

A note on difficult structure alignment problems

(2008) M. J. Sippl et al.   BIOINFORMATICS

Structural search and retrieval using a tableau representation of protein folding patterns

(2008) Arun S. Konagurthu et al.   BIOINFORMATICS

On distance and similarity in fold space

(2008) M. J. Sippl   BIOINFORMATICS

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

Alignment of protein structures in the presence of domain motions

(2008) Roberto Mosca et al.   BMC BIOINFORMATICS

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE