Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM

Elbow Flexibility of the kt38 RNA Kink-Turn Motif Investigated by Free-Energy Molecular Dynamics Simulations

(2009) Jeremy Curuksu et al.   BIOPHYSICAL JOURNAL

Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields

(2009) Eva Fadrná et al.   Journal of Chemical Theory and Computation

Molecular Simulation Studies of Monovalent Counterion-Mediated Interactions in a Model RNA Kissing Loop

(2009) Alan A. Chen et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitch

(2009) A. Villa et al.   NUCLEIC ACIDS RESEARCH

A repulsive field: advances in the electrostatics of the ion atmosphere

(2008) Vincent B Chu et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Ribosome Performance Is Enhanced by a Rich Cluster of Pseudouridines in the A-site Finger Region of the Large Subunit

(2008) Dorota Piekna-Przybylska et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Importance of G·A Hydrogen Bonding in the Metal Ion- and Protein-induced Folding of a Kink Turn RNA

(2008) Ben Turner et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular Dynamics Study of the Ribosomal A-Site

(2008) Julia Romanowska et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A short guide for molecular dynamics simulations of RNA systems

(2008) Yaser Hashem et al.   METHODS

Visualization of the Hybrid State of tRNA Binding Promoted by Spontaneous Ratcheting of the Ribosome

(2008) Xabier Agirrezabala et al.   MOLECULAR CELL

The UA_handle: a versatile submotif in stable RNA architectures†

(2008) Luc Jaeger et al.   NUCLEIC ACIDS RESEARCH