Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons

Histone modifications at human enhancers reflect global cell-type-specific gene expression

(2009) Nathaniel D. Heintzman et al.   NATURE

ChIP-seq accurately predicts tissue-specific activity of enhancers

(2009) Axel Visel et al.   NATURE

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes

(2009) Xianjun Dong et al.   GENOME BIOLOGY

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes

(2008) Pavla Navratilova et al.   DEVELOPMENTAL BIOLOGY

Genomewide Analysis of Box C/D and Box H/ACA snoRNAs in Chlamydomonas reinhardtii Reveals an Extensive Organization Into Intronic Gene Clusters

(2008) C.-L. Chen et al.   GENETICS

Dispensability of mammalian DNA

(2008) C. McLean et al.   GENOME RESEARCH

Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer

(2008) Hsuan Pu Chen et al.   GENOMICS

An ultraconserved Hox–Pbx responsive element resides in the coding sequence of Hoxa2 and is active in rhombomere 4

(2008) Xavier Lampe et al.   NUCLEIC ACIDS RESEARCH

Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence

(2008) Dirk A. Kleinjan et al.   PLoS Genetics

A Transcriptional Enhancer from the Coding Region of ADAMTS5

(2008) Kristen K. B. Barthel et al.   PLoS One

A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2

(2008) S. Tumpel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

(2008) J. J. Forman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Neural Crest and Glial Enhancers at the Mouse Sox10 Locus through Transgenesis in Zebrafish

(2008) Anthony Antonellis et al.   PLoS Genetics

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

(2008) Pär G Engström et al.   GENOME BIOLOGY

Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock

(2007) S. Stephen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Essential elements in the coding region of mRNA for translation of ColE2 Rep protein

(2007) T. Nagase et al.   PLASMID