Energy barriers and driving forces in tRNA translocation through the ribosome

Consensus among multiple approaches as a reliability measure for flexible fitting into cryo-EM data

(2013) Aqeel Ahmed et al.   JOURNAL OF STRUCTURAL BIOLOGY

Contribution of intersubunit bridges to the energy barrier of ribosomal translocation

(2012) Qi Liu et al.   NUCLEIC ACIDS RESEARCH

Structure and Dynamics of the Mammalian Ribosomal Pretranslocation Complex

(2011) Tatyana Budkevich et al.   MOLECULAR CELL

Single-Molecule Fluorescence Measurements of Ribosomal Translocation Dynamics

(2011) Chunlai Chen et al.   MOLECULAR CELL

Transfer RNA–mediated regulation of ribosome dynamics during protein synthesis

(2011) Jingyi Fei et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

An Extensive Network of Information Flow through the B1b/c Intersubunit Bridge of the Yeast Ribosome

(2011) Michael H. J. Rhodin et al.   PLoS One

Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding

(2011) J. A. Dunkle et al.   SCIENCE

The Role of L1 Stalk–tRNA Interaction in the Ribosome Elongation Cycle

(2010) Leonardo G. Trabuco et al.   JOURNAL OF MOLECULAR BIOLOGY

Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy

(2010) Niels Fischer et al.   NATURE

A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding

(2010) Michael H. J. Rhodin et al.   NUCLEIC ACIDS RESEARCH

Following movement of the L1 stalk between three functional states in single ribosomes

(2009) Peter V. Cornish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures of the Ribosome in Intermediate States of Ratcheting

(2009) W. Zhang et al.   SCIENCE

The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State

(2009) Y.-G. Gao et al.   SCIENCE

Navigating the ribosome's metastable energy landscape

(2009) James B. Munro et al.   TRENDS IN BIOCHEMICAL SCIENCES

Flexible Fitting of High-Resolution X-Ray Structures into Cryoelectron Microscopy Maps Using Biased Molecular Dynamics Simulations

(2008) Marek Orzechowski et al.   BIOPHYSICAL JOURNAL

Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data

(2008) Alexander Grishaev et al.   JOURNAL OF BIOMOLECULAR NMR

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

YUP.SCX: Coaxing atomic models into medium resolution electron density maps

(2008) Robert K.-Z. Tan et al.   JOURNAL OF STRUCTURAL BIOLOGY

Visualization of the Hybrid State of tRNA Binding Promoted by Spontaneous Ratcheting of the Ribosome

(2008) Xabier Agirrezabala et al.   MOLECULAR CELL

Coupling of Ribosomal L1 Stalk and tRNA Dynamics during Translation Elongation

(2008) Jingyi Fei et al.   MOLECULAR CELL

Spontaneous Intersubunit Rotation in Single Ribosomes

(2008) Peter V. Cornish et al.   MOLECULAR CELL

Structure of ratcheted ribosomes with tRNAs in hybrid states

(2008) P. Julian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields

(2008) Paul C. Whitford et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS