Looking for a promoter in 3D

Intra-nuclear mobility and target search mechanisms of transcription factors: A single-molecule perspective on gene expression

(2012) Davide Normanno et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Generalized Facilitated Diffusion Model for DNA-Binding Proteins with Search and Recognition States

(2012) Maximilian Bauer et al.   BIOPHYSICAL JOURNAL

Structures during binding of cAMP receptor to promoter DNA: promoter search slowed by non-specific sites

(2012) Dietmar Porschke   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Fast microscopical dissection of action scenes played byEscherichia coliRNA polymerase

(2012) Yuki Suzuki et al.   FEBS LETTERS

The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion

(2012) Feng Wang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A method for computing association rate constants of atomistically represented proteins under macromolecular crowding

(2012) Sanbo Qin et al.   PHYSICAL BIOLOGY

Physical manipulation of the Escherichia coli chromosome reveals its soft nature

(2012) J. Pelletier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classes of fast and specific search mechanisms for proteins on DNA

(2012) M Sheinman et al.   REPORTS ON PROGRESS IN PHYSICS

Effects of Macromolecular Crowding on Genetic Networks

(2011) Marco J. Morelli et al.   BIOPHYSICAL JOURNAL

Theoretical and Computational Modeling of Target-Site Search Kinetics In Vitro and In Vivo

(2011) Elena F. Koslover et al.   BIOPHYSICAL JOURNAL

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

Dancing on DNA: Kinetic Aspects of Search Processes on DNA

(2011) Anahita Tafvizi et al.   CHEMPHYSCHEM

Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis

(2011) Ruth M. Saecker et al.   JOURNAL OF MOLECULAR BIOLOGY

The E. coli Anti-Sigma Factor Rsd: Studies on the Specificity and Regulation of Its Expression

(2011) Nina Hofmann et al.   PLoS One

Intermittent search strategies

(2011) O. Bénichou et al.   REVIEWS OF MODERN PHYSICS

Unified regression model of binding equilibria in crowded environments

(2011) Byoungkoo Lee et al.   Scientific Reports

Regulation of Alternative Sigma Factor Use

(2010) Sofia Österberg et al.   Annual Review of Microbiology

Interaction ofEscherichia coliRNA Polymerase σ70Subunit with Promoter Elements in the Context of Free σ70, RNA Polymerase Holoenzyme, and the β′-σ70Complex

(2010) Vladimir Mekler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A global view of Escherichia coli Rsd protein and its interactions

(2009) Sarah E. Piper et al.   Molecular BioSystems

The elongation factor RfaH and the initiation factor   bind to the same site on the transcription elongation complex

(2008) A. Sevostyanova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA