A self-organization framework for symmetry breaking in the mammalian embryo

Cytosystems dynamics in self-organization of tissue architecture

(2013) Yoshiki Sasai   NATURE

Stochastic processes in the development of pluripotency in vivo

(2012) Sebastian Wennekamp et al.   Biotechnology Journal

Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase

(2012) Yosef Buganim et al.   CELL

Optimality in the Development of Intestinal Crypts

(2012) Shalev Itzkovitz et al.   CELL

Developmental fate and lineage commitment of singled mouse blastomeres

(2012) C. Lorthongpanich et al.   DEVELOPMENT

FGF4 is required for lineage restriction and salt-and-pepper distribution of primitive endoderm factors but not their initial expression in the mouse

(2012) M. Kang et al.   DEVELOPMENT

Generation and live imaging of an endogenous Cdx2 reporter mouse line

(2012) Katie McDole et al.   GENESIS

Multiview light-sheet microscope for rapid in toto imaging

(2012) Uros Krzic et al.   NATURE METHODS

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Differential Diffusivity of Nodal and Lefty Underlies a Reaction-Diffusion Patterning System

(2012) P. Muller et al.   SCIENCE

Universal patterns of stem cell fate in cycling adult tissues

(2011) A. M. Klein et al.   DEVELOPMENT

Segregation during cleavage in the mammalian embryo? A critical comparison of whole-mount/CLSM and section immunohistochemistry casts doubts on segregation of axis-relevant leptin domains in the rabbit

(2011) T. Littwin et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Single-molecule transcript counting of stem-cell markers in the mouse intestine

(2011) Shalev Itzkovitz et al.   NATURE CELL BIOLOGY

Oct4 kinetics predict cell lineage patterning in the early mammalian embryo

(2011) Nicolas Plachta et al.   NATURE CELL BIOLOGY

Deterministic and Stochastic Allele Specific Gene Expression in Single Mouse Blastomeres

(2011) Fuchou Tang et al.   PLoS One

Dynamic changes in leptin distribution in the progression from ovum to blastocyst of the pre-implantation mouse embryo

(2011) Laura C Schulz et al.   REPRODUCTION

Systems biology beyond networks: Generating order from disorder through self-organization

(2011) K. Saetzler et al.   SEMINARS IN CANCER BIOLOGY

Simulating the Mammalian Blastocyst - Molecular and Mechanical Interactions Pattern the Embryo

(2011) Pawel Krupinski et al.   PLoS Computational Biology

Intestinal Crypt Homeostasis Results from Neutral Competition between Symmetrically Dividing Lgr5 Stem Cells

(2010) Hugo J. Snippert et al.   CELL

Mouse Germ Line Stem Cells Undergo Rapid and Stochastic Turnover

(2010) Allon M. Klein et al.   Cell Stem Cell

Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis

(2010) Fuchou Tang et al.   Cell Stem Cell

FGF signal-dependent segregation of primitive endoderm and epiblast in the mouse blastocyst

(2010) Y. Yamanaka et al.   DEVELOPMENT

Disorganized epithelial polarity and excess trophectoderm cell fate in preimplantation embryos lacking E-cadherin

(2010) R. O. Stephenson et al.   DEVELOPMENT

Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

(2010) Guoji Guo et al.   DEVELOPMENTAL CELL

The Ordered Architecture of Murine Ear Epidermis Is Maintained by Progenitor Cells with Random Fate

(2010) David P. Doupé et al.   DEVELOPMENTAL CELL

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

Origin and formation of the first two distinct cell types of the inner cell mass in the mouse embryo

(2010) S. A. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise Can Induce Bimodality in Positive Transcriptional Feedback Loops Without Bistability

(2010) T.-L. To et al.   SCIENCE

Intestinal Stem Cell Replacement Follows a Pattern of Neutral Drift

(2010) C. Lopez-Garcia et al.   SCIENCE

Alignment between PIN1 Polarity and Microtubule Orientation in the Shoot Apical Meristem Reveals a Tight Coupling between Morphogenesis and Auxin Transport

(2010) Marcus G. Heisler et al.   PLOS BIOLOGY

From Mouse Egg to Mouse Embryo: Polarities, Axes, and Tissues

(2009) Martin H. Johnson   Annual Review of Cell and Developmental Biology

Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse

(2009) J. Rossant et al.   DEVELOPMENT

Active cell movements coupled to positional induction are involved in lineage segregation in the mouse blastocyst

(2009) Sigolène M. Meilhac et al.   DEVELOPMENTAL BIOLOGY

The Hippo Signaling Pathway Components Lats and Yap Pattern Tead4 Activity to Distinguish Mouse Trophectoderm from Inner Cell Mass

(2009) Noriyuki Nishioka et al.   DEVELOPMENTAL CELL

Theoretical exploration of blastocyst morphogenesis

(2009) Rebecca J. Shipley et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Establishment of trophectoderm and inner cell mass lineages in the mouse embryo

(2009) Yusuke Marikawa et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Orientation of Mitotic Spindles during the 8- to 16-Cell Stage Transition in Mouse Embryos

(2009) Nicolas Dard et al.   PLoS One

Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells

(2009) Tibor Kalmar et al.   PLOS BIOLOGY

Capturing Pluripotency

(2008) Jose Silva et al.   CELL

Stochastic Processes during Mouse Blastocyst Patterning

(2008) Jens Erik Dietrich et al.   CELLS TISSUES ORGANS

Computer simulation of emerging asymmetry in the mouse blastocyst

(2008) H. Honda et al.   DEVELOPMENT

Formation of the embryonic-abembryonic axis of the mouse blastocyst: relationships between orientation of early cleavage divisions and pattern of symmetric/asymmetric divisions

(2008) M. Bischoff et al.   DEVELOPMENT

Distinct sequential cell behaviours direct primitive endoderm formation in the mouse blastocyst

(2008) B. Plusa et al.   DEVELOPMENT

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

(2008) Hannah H. Chang et al.   NATURE

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS

Self-organization in cell biology: a brief history

(2008) Eric Karsenti   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Developmental Patterning by Mechanical Signals in Arabidopsis

(2008) O. Hamant et al.   SCIENCE

Cdx2 acts downstream of cell polarization to cell-autonomously promote trophectoderm fate in the early mouse embryo

(2007) Amy Ralston et al.   DEVELOPMENTAL BIOLOGY

Tead4 is required for specification of trophectoderm in pre-implantation mouse embryos

(2007) Noriyuki Nishioka et al.   MECHANISMS OF DEVELOPMENT