Non-transcriptional regulatory processes shape transcriptional network dynamics

Phenotypic heterogeneity in mycobacterial stringent response

(2011) Sayantari Ghosh et al.   BMC Systems Biology

The stressosome: molecular architecture of a signalling hub

(2010) Jon Marles-Wright et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The biological significance of substrate inhibition: A mechanism with diverse functions

(2010) Michael C. Reed et al.   BIOESSAYS

Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes

(2010) Dokyun Na et al.   BMC Systems Biology

Classic and contemporary approaches to modeling biochemical reactions

(2010) W. W. Chen et al.   GENES & DEVELOPMENT

Regulation of Acid Resistance by Connectors of Two-Component Signal Transduction Systems in Escherichia coli

(2010) Y. Eguchi et al.   JOURNAL OF BACTERIOLOGY

Novel Aspects of the Acid Response Network of E. coli K-12 Are Revealed by a Study of Transcriptional Dynamics

(2010) Neil A. Burton et al.   JOURNAL OF MOLECULAR BIOLOGY

Getting in the Loop: Regulation of Development in Caulobacter crescentus

(2010) P. D. Curtis et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the ‘feast to famine’ gradient in Escherichia coli

(2010) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Designing customized cell signalling circuits

(2010) Wendell A. Lim   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Spatial gradient of protein phosphorylation underlies replicative asymmetry in a bacterium

(2010) Y. E. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence

(2010) Eitan Rotem et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis

(2010) A. Chastanet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Sources of Robustness in Biochemical Reaction Networks

(2010) G. Shinar et al.   SCIENCE

Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems

(2010) J. Christian J. Ray et al.   PLoS Computational Biology

The Role of Coupled Positive Feedback in the Expression of the SPI1 Type Three Secretion System in Salmonella

(2010) Supreet Saini et al.   PLoS Pathogens

On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems

(2009) Lan K Nguyen et al.   BMC Systems Biology

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

(2009) Stefan Klumpp et al.   CELL

Dynamic Disorder-Driven Substrate Inhibition and Bistability in a Simple Enzymatic Reaction

(2009) Srabanti Chaudhury et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Synthetic protein scaffolds provide modular control over metabolic flux

(2009) John E Dueber et al.   NATURE BIOTECHNOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Emergent bistability by a growth-modulating positive feedback circuit

(2009) Cheemeng Tan et al.   Nature Chemical Biology

Bistable switches control memory and plasticity in cellular differentiation

(2009) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciding fate in adverse times: Sporulation and competence inBacillus subtilis

(2009) Daniel Schultz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complexity in bacterial cell-cell communication: Quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay

(2009) I. B. Bischofs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of proteolysis in the Caulobacter crescentus cell cycle and development

(2009) Urs Jenal   RESEARCH IN MICROBIOLOGY

Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway

(2009) Linda Løvdok et al.   PLOS BIOLOGY

Quantifying the Integration of Quorum-Sensing Signals with Single-Cell Resolution

(2009) Tao Long et al.   PLOS BIOLOGY

Synthetic Biology for Synthetic Chemistry

(2008) Jay D. Keasling   ACS Chemical Biology

Small RNAs Establish Delays and Temporal Thresholds in Gene Expression

(2008) Stefan Legewie et al.   BIOPHYSICAL JOURNAL

Positive Receptor Feedback during Lineage Commitment Can Generate Ultrasensitivity to Ligand and Confer Robustness to a Bistable Switch

(2008) Santhosh Palani et al.   BIOPHYSICAL JOURNAL

Strong negative self regulation of Prokaryotic transcription factors increases the intrinsic noise of protein expression

(2008) Dov J Stekel et al.   BMC Systems Biology

Allosteric Regulation of Histidine Kinases by Their Cognate Response Regulator Determines Cell Fate

(2008) Ralf Paul et al.   CELL

Molecular Titration and Ultrasensitivity in Regulatory Networks

(2008) Nicolas E. Buchler et al.   JOURNAL OF MOLECULAR BIOLOGY

Functional organisation of Escherichia coli transcriptional regulatory network

(2008) Agustino Martínez-Antonio et al.   JOURNAL OF MOLECULAR BIOLOGY

Hysteretic and graded responses in bacterial two-component signal transduction

(2008) Oleg A. Igoshin et al.   MOLECULAR MICROBIOLOGY

The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest

(2008) Gábor Balázsi et al.   Molecular Systems Biology

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit

(2008) T. Miyashiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression

(2008) J. M. Pedraza et al.   SCIENCE

Molecular Architecture of the "Stressosome," a Signal Integration and Transduction Hub

(2008) J. Marles-Wright et al.   SCIENCE