4.7 Article

Optical measurements to determine the thickness of calcite crystals and the mass of thin carbonate particles such as coccoliths

Journal

NATURE PROTOCOLS
Volume 9, Issue 3, Pages 633-642

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/nprot.2014.028

Keywords

-

Funding

  1. EU Seventh Framework program Past4Future
  2. Agence Nationale de la Recherche [ANR-12-B06-0007]

Ask authors/readers for more resources

We describe a procedure for measuring the thickness and mass of calcite particles that works for most calcite particles <4.5-mu m thick. The calcite particles are observed in cross-polarized light, which enables the light transmitted through the calcite particles to be correlated with their thickness. Three polarizing planes are used to minimize the darkening of crystals at some orientations (black cross). This allows direct measurement of the thickness without recourse to a transfer function. This procedure has been used recently to determine the degree of calcification of coccoliths, which provides an indicator of ocean acidification. It takes only a few minutes per sample, and it is an improvement over the former protocol, which did not allow measurement of the thickness and mass of particles thicker than 1.5 mu m.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Multidisciplinary Sciences

Enhanced ocean-atmosphere carbon partitioning via the carbonate counter pump during the last deglacial

Stephanie Duchamp-Alphonse, Giuseppe Siani, Elisabeth Michel, Luc Beaufort, Yves Gally, Samuel L. Jaccard

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

X-ray nanotomography of coccolithophores reveals that coccolith mass and segment number correlate with grid size

T. Beuvier, I. Probert, L. Beaufort, B. Sucheras-Marx, Y. Chushkin, F. Zontone, A. Gibaud

NATURE COMMUNICATIONS (2019)

Article Oceanography

Anatomy of a 'suspended' seafloor in the dense brine waters of the deep hypersaline Urania Basin

I. W. Aiello, L. Beaufort, T. Goldhammer, V. B. Heuer, K-U Hinrichs, M. Zabel

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2020)

Article Paleontology

Late Quaternary coccolith weight variations in the northern South China Sea and their environmental controls

Xiang Su, Chuanlian Liu, Luc Beaufort

MARINE MICROPALEONTOLOGY (2020)

Article Computer Science, Interdisciplinary Applications

Automated recognition by multiple convolutional neural networks of modern, fossil, intact and damaged pollen grains

Benjamin Bourel, Ross Marchant, Thibault de Garidel-Thoron, Martin Tetard, Doris Barboni, Yves Gally, Luc Beaufort

COMPUTERS & GEOSCIENCES (2020)

Article Paleontology

Origin of manganese in nannofossil calcite based on synchrotron nanoXRF and XANES

Baptiste Sucheras-Marx, Fabienne Giraud, Isabelle Daniel, Camille Rivard, Marie-Pierre Aubry, Karl-Heinz Baumann, Luc Beaufort, Remi Tucoulou, Alexandre Simionovici

Summary: Calcareous nannofossils are micrometric calcite platelets secreted by coccolithophores and incertae sedis, inhabiting various geological settings in different ages. The analysis of manganese distribution and valence in these nannofossils highlights its potential as a proxy for paleobiological or paleoenvironmental studies. The incorporation of manganese in nannofossils is controlled by diagenesis, with Mn being present in the form of MnCO3.

MARINE MICROPALEONTOLOGY (2021)

Article Geology

Timescale dependent sedimentary record during the past 130 kyr from a tropical mixed siliciclastic-carbonate shelf edge and slope: Ashmore Trough (southern Gulf of Papua)

Gianni Mallarino, Jason M. Francis, Stephan J. Jorry, James J. Daniell, Andre W. Droxler, Gerald R. Dickens, Luc Beaufort, Samuel J. Bentley, Bradley N. Opdyke, Larry C. Peterson

Summary: In tropical and sub-tropical mixed siliciclastic-carbonate depositional systems, interactions between fluvial input and neritic carbonate are influenced by sea level, shelf physiography, and climate change at different timescales, with sea level and shelf physiography emerging as primary controls at the 100 kyr scale, and climate change playing a role during the unstable atmospheric and oceanic conditions of the last deglaciation at the millennial scale.

SEDIMENTOLOGY (2021)

Article Geochemistry & Geophysics

Controls on Alkenone Carbon Isotope Fractionation in the Modern Ocean

Samuel R. Phelps, Heather M. Stoll, Clara T. Bolton, Luc Beaufort, Pratigya J. Polissar

Summary: This study examines the factors influencing epsilon(p37:2) in the ocean, finding irradiance to be a key determinant in modern oceans. The research suggests that future estimations of CO2 based on epsilon(p37:2) should incorporate empirical or mechanistic models to quantitatively account for variations in irradiance and cell size.

GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS (2021)

Article Multidisciplinary Sciences

Cyclic evolution of phytoplankton forced by changes in tropical seasonality

Luc Beaufort, Clara T. Bolton, Anta-Clarisse Sarr, Baptiste Sucheras-Marx, Yair Rosenthal, Yannick Donnadieu, Nicolas Barbarin, Samantha Bova, Pauline Cornuault, Yves Gally, Emmeline Gray, Jean-Charles Mazur, Martin Tetard

Summary: The study reveals that over the past 2.8 million years, Earth's orbital eccentricity has significantly influenced the morphological evolution of coccolithophores, leading them to adapt to different climate environments. Simulations suggest that changes in seasonal cycles directly impact the diversity of ecological niches in the ocean, affecting the morphology and carbonate export of coccolithophores.

NATURE (2022)

Article Ecology

Rapid diversification underlying the global dominance of a cosmopolitan phytoplankton

El Mahdi Bendif, Ian Probert, Odysseas A. Archontikis, Jeremy R. Young, Luc Beaufort, Rosalind E. Rickaby, Dmitry Filatov

Summary: This study investigates the evolutionary relationships and ecological adaptations of G. huxleyi morphotypes across different environments. Results show that G. huxleyi is actually composed of at least three distinct species, and their divergence is related to glacial-cycle dynamics.

ISME JOURNAL (2023)

Article Ecology

Toward a global calibration for quantifying past oxygenation in oxygen minimum zones using benthic Foraminifera

Martin Tetard, Laetitia Licari, Ekaterina Ovsepyan, Kazuyo Tachikawa, Luc Beaufort

Summary: OMZs are oceanic areas with low levels of dissolved oxygen, expanding due to global warming. A new method of oxygen reconstruction, using benthic foraminiferal tests, was developed and calibrated for use in different oceanic regions. This method, along with two others based on benthic foraminiferal assemblages and porosity of a single species, provided consistent past oxygenation reconstructions.

BIOGEOSCIENCES (2021)

Article Ecology

Technical note: A universal method for measuring the thickness of microscopic calcite crystals, based on bidirectional circular polarization

Luc Beaufort, Yves Gally, Baptiste Sucheras-Marx, Patrick Ferrand, Julien Duboisset

Summary: This study presents a new method for measuring crystal thickness that does not require calibration, is compatible with different cameras and microscopes, and does not need precise control of light intensity. The method uses bidirectional circular polarization and a simple equation to calculate thickness independently of calibration.

BIOGEOSCIENCES (2021)

Article Geosciences, Multidisciplinary

Technical note: A new automated radiolarian image acquisition, stacking, processing, segmentation and identification workflow

Martin Tetard, Ross Marchant, Giuseppe Cortese, Yves Gally, Thibault De Garidel-Thoron, Luc Beaufort

CLIMATE OF THE PAST (2020)

Article Geosciences, Multidisciplinary

Dynamics of primary productivity in the northeastern Bay of Bengal over the last 26 000 years

Xinquan Zhou, Stephanie Duchamp-Alphonse, Masa Kageyama, Franck Bassinot, Luc Beaufort, Christophe Colin

CLIMATE OF THE PAST (2020)

Article Geosciences, Multidisciplinary

From monsoon to marine productivity in the Arabian Sea: insights from glacial and interglacial climates

Priscilla Le Mezo, Luc Beaufort, Laurent Bopp, Pascale Braconnot, Masa Kageyama

CLIMATE OF THE PAST (2017)

No Data Available