Using TRIP for genome-wide position effect analysis in cultured cells

Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

(2013) Waseem Akhtar et al.   CELL

Decoupling Epigenetic and Genetic Effects through Systematic Analysis of Gene Position

(2013) Menzies Chen et al.   Cell Reports

Retargeting Sleeping Beauty Transposon Insertions by Engineered Zinc Finger DNA-binding Domains

(2012) Katrin Voigt et al.   MOLECULAR THERAPY

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

(2012) Eilon Sharon et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Chimeric piggyBac transposases for genomic targeting in human cells

(2012) Jesse B. Owens et al.   NUCLEIC ACIDS RESEARCH

Retargeting transposon insertions by the adeno-associated virus Rep protein

(2012) Ismahen Ammar et al.   NUCLEIC ACIDS RESEARCH

Genome-wide target profiling of piggyBac and Tol2 in HEK 293: pros and cons for gene discovery and gene therapy

(2011) Yaa-Jyuhn J Meir et al.   BMC BIOTECHNOLOGY

Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor

(2011) Sandra Ruf et al.   NATURE GENETICS

Cellular barcoding tool for clonal analysis in the hematopoietic system

(2010) A. Gerrits et al.   BLOOD

Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome

(2010) Vladimir N Babenko et al.   BMC GENOMICS

One naive T cell, multiple fates in CD8+T cell differentiation

(2010) Carmen Gerlach et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Gene Transfer Efficiency and Genome-Wide Integration Profiling of Sleeping Beauty, Tol2, and PiggyBac Transposons in Human Primary T Cells

(2010) Xin Huang et al.   MOLECULAR THERAPY

Deciphering the Code for Retroviral Integration Target Site Selection

(2010) Federico Andrea Santoni et al.   PLoS Computational Biology

A ‘higher order’ of telomere regulation: telomere heterochromatin and telomeric RNAs

(2009) Stefan Schoeftner et al.   EMBO JOURNAL