Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA

Exploring RNA Structural Codes with SHAPE Chemistry

(2011) Kevin M. Weeks et al.   ACCOUNTS OF CHEMICAL RESEARCH

Nonhierarchical Ribonucleoprotein Assembly Suggests a Strain-Propagation Model for Protein-Facilitated RNA Folding

(2010) Caia D. S. Duncan et al.   BIOCHEMISTRY

Advances in RNA structure analysis by chemical probing

(2010) Kevin M Weeks   CURRENT OPINION IN STRUCTURAL BIOLOGY

Selective 2′-Hydroxyl Acylation Analyzed by Protection from Exoribonuclease

(2010) Kady-Ann Steen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome

(2010) C. Gherghe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNase R mutants elucidate the catalysis of structured RNA: RNA-binding domains select the RNAs targeted for degradation

(2009) Rute Gonçalves Matos et al.   BIOCHEMICAL JOURNAL

Determination of Key Residues for Catalysis and RNA Cleavage Specificity

(2009) Ana Barbas et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights into How RNase R Degrades Structured RNA: Analysis of the Nuclease Domain

(2009) Helen A. Vincent et al.   JOURNAL OF MOLECULAR BIOLOGY

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch

(2009) N. Kulshina et al.   RNA

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA

(2009) K. A. Wilkinson et al.   RNA

How RNA Unfolds and Refolds

(2008) Pan T.X. Li et al.   Annual Review of Biochemistry

Complex Ligand-Induced Conformational Changes in tRNAAspRevealed by Single-Nucleotide Resolution SHAPE Chemistry†

(2008) Bin Wang et al.   BIOCHEMISTRY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

The Roles of Individual Domains of RNase R in Substrate Binding and Exoribonuclease Activity

(2008) Helen A. Vincent et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Slow Conformational Dynamics at C2′-endo Nucleotides in RNA

(2008) Costin M. Gherghe et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Strong Correlation between SHAPE Chemistry and the Generalized NMR Order Parameter (S2) in RNA

(2008) Costin M. Gherghe et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Time-Resolved RNA SHAPE Chemistry

(2008) Stefanie A. Mortimer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the RNase II Nuclease Family

(2008) Esben Lorentzen et al.   MOLECULAR CELL

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

(2008) Somdeb Mitra et al.   NUCLEIC ACIDS RESEARCH

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY