Dynamic characterization of growth and gene expression using high-throughput automated flow cytometry

Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle

(2013) Ran Kafri et al.   NATURE

Systematic Identification of Signal-Activated Stochastic Gene Regulation

(2013) G. Neuert et al.   SCIENCE

Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

(2012) Marc R Birtwistle et al.   BMC Systems Biology

Oxidative protein folding and unfolded protein response elicit differing redox regulation in endoplasmic reticulum and cytosol of yeast

(2012) Marizela Delic et al.   FREE RADICAL BIOLOGY AND MEDICINE

Ribosome Deficiency Protects Against ER Stress in Saccharomyces cerevisiae

(2012) K. K. Steffen et al.   GENETICS

Cellular Noise Regulons Underlie Fluctuations in Saccharomyces cerevisiae

(2012) Jacob Stewart-Ornstein et al.   MOLECULAR CELL

Out with the old, in with the new? Comparing methods for measuring protein degradation

(2011) Jonathan W Yewdell et al.   CELL BIOLOGY INTERNATIONAL

Proteasomal degradation of Sfp1 contributes to the repression of ribosome biogenesis during starvation and is mediated by the proteasome activator Blm10

(2011) Antonio Diaz Lopez et al.   MOLECULAR BIOLOGY OF THE CELL

Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae

(2011) R. Scott McIsaac et al.   MOLECULAR BIOLOGY OF THE CELL

Resolution of Gene Regulatory Conflicts Caused by Combinations of Antibiotics

(2011) Tobias Bollenbach et al.   MOLECULAR CELL

Lyapunov exponents and phase diagrams reveal multi-factorial control over TRAIL-induced apoptosis

(2011) B. B. Aldridge et al.   Molecular Systems Biology

A regression model approach to enable cell morphology correction in high-throughput flow cytometry

(2011) T. A. Knijnenburg et al.   Molecular Systems Biology

A parallel microfluidic flow cytometer for high-content screening

(2011) Brian K McKenna et al.   NATURE METHODS

Optimizing Optical Flow Cytometry for Cell Volume-Based Sorting and Analysis

(2011) Amit Tzur et al.   PLoS One

Ubiquitin-recognition protein Ufd1 couples the endoplasmic reticulum (ER) stress response to cell cycle control

(2011) M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome Half-Life Dynamics in Living Human Cells

(2011) E. Eden et al.   SCIENCE

Retrotranslocation of a Misfolded Luminal ER Protein by the Ubiquitin-Ligase Hrd1p

(2010) Pedro Carvalho et al.   CELL

Measuring growth rate in high-throughput growth phenotyping

(2010) Anders Blomberg   CURRENT OPINION IN BIOTECHNOLOGY

Protein Quality Control in the Cytosol and the Endoplasmic Reticulum: Brothers in Arms

(2010) Alexander Buchberger et al.   MOLECULAR CELL

BiP Binding to the ER-Stress Sensor Ire1 Tunes the Homeostatic Behavior of the Unfolded Protein Response

(2010) David Pincus et al.   PLOS BIOLOGY

Flow-Based Cytometric Analysis of Cell Cycle via Simulated Cell Populations

(2010) M. Rowan Brown et al.   PLoS Computational Biology

Quantitative Time-Lapse Fluorescence Microscopy in Single Cells

(2009) Dale Muzzey et al.   Annual Review of Cell and Developmental Biology

Far-red fluorescent tags for protein imaging in living tissues

(2009) Dmitry Shcherbo et al.   BIOCHEMICAL JOURNAL

Listening to the noise: random fluctuations reveal gene network parameters

(2009) Brian Munsky et al.   Molecular Systems Biology

Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures

(2009) Dirk Müller et al.   PLoS Computational Biology

Optimization of yeast cell cycle analysis and morphological characterization by multispectral imaging flow cytometry

(2008) Meredith E. K. Calvert et al.   CYTOMETRY PART A

One step at a time: endoplasmic reticulum-associated degradation

(2008) Shruthi S. Vembar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways

(2008) Chen-Shan Chin et al.   PLOS BIOLOGY