Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Disease Manifestations and Pathogenic Mechanisms of Group A Streptococcus

(2014) M. J. Walker et al.   CLINICAL MICROBIOLOGY REVIEWS

The Globally Disseminated M1T1 Clone of Group A Streptococcus Evades Autophagy for Intracellular Replication

(2013) Timothy C. Barnett et al.   Cell Host & Microbe

Scarlet Fever Is Caused By a Limited Number of Streptococcus pyogenes Lineages and Is Associated with the Exotoxin Genes ssa, speA and speC

(2013) Catarina Silva-Costa et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Draft Genome Sequences of Two Streptococcus pyogenes Strains Involved in Abnormal Sharp Raised Scarlet Fever in China, 2011

(2012) Y. You et al.   JOURNAL OF BACTERIOLOGY

Molecular Characterization of the 2011 Hong Kong Scarlet Fever Outbreak

(2012) H. Tse et al.   JOURNAL OF INFECTIOUS DISEASES

Epidemiological and molecular characteristics of clinical isolates of Streptococcus pyogenes collected between 2005 and 2008 from Chinese children

(2012) Y. Liang et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

(2012) Miao He et al.   NATURE GENETICS

Outbreak of Scarlet Fever Associated With emm12 Type Group A Streptococcus in 2011 in Shanghai, China

(2012) Mingliang Chen et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Streptococcus pyogenes and re-emergence of scarlet fever as a public health problem

(2012) Samson SY Wong et al.   Emerging Microbes & Infections

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Scarlet fever outbreak in Hong Kong, 2011

(2011) Yu-Chia Hsieh et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

(2010) S. B. Beres et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Changing Epidemiology of Streptococcus pyogenes emm Types and Associated Invasive and Noninvasive Infections in Southern Taiwan

(2009) Y.-F. Su et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH