4.8 Article

Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis

Journal

NATURE CHEMISTRY
Volume 4, Issue 4, Pages 292-297

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/nchem.1296

Keywords

-

Funding

  1. UK Biotechnology and Biological Sciences Research Council (BBSRC) [BB/E008380/1]
  2. Cardiff University
  3. BBSRC [BB/E008380/1] Funding Source: UKRI
  4. Biotechnology and Biological Sciences Research Council [BB/E008380/1] Funding Source: researchfish

Ask authors/readers for more resources

The question of whether protein motions play a role in the chemical step of enzymatic catalysis has generated much controversy in recent years. Debate has recently reignited over possible dynamic contributions to catalysis in dihydrofolate reductase, following conflicting conclusions from studies of the N23PP/S148A variant of the Escherichia coli enzyme. By investigating the temperature dependence of kinetic isotope effects, we present evidence that the reduction in the hydride transfer rate constants in this variant is not a direct result of impairment of conformational fluctuations. Instead, the conformational state of the enzyme immediately before hydride transfer, which determines the electrostatic environment of the active site, affects the rate constant for the reaction. Although protein motions are clearly important for binding and release of substrates and products, there appears to be no detectable dynamic coupling of protein motions to the hydride transfer step itself.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Multidisciplinary

Chemical Ligation and Isotope Labeling to Locate Dynamic Effects during Catalysis by Dihydrofolate Reductase

Louis Y. P. Luk, J. Javier Ruiz-Pernia, Aduragbemi S. Adesina, E. Joel Loveridge, Inaki Tunon, Vincent Moliner, Rudolf K. Allemann

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2015)

Article Chemistry, Physical

Protein motions and dynamic effects in enzyme catalysis

Louis Y. P. Luk, E. Joel Loveridge, Rudolf K. Allemann

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2015)

Article Chemistry, Multidisciplinary

Minimization of dynamic effects in the evolution of dihydrofolate reductase

J. Javier Ruiz-Pernia, Enas Behiry, Louis Y. P. Luk, E. Joel Loveridge, Inaki Tunon, Vicent Moliner, Rudolf K. Allemann

CHEMICAL SCIENCE (2016)

Article Microbiology

Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex

E. Joel Loveridge, Cerith Jones, Matthew J. Bull, Suzy C. Moody, Malgorzata W. Kahl, Zainab Khan, Louis Neilson, Marina Tomeva, Sarah E. Adams, Andrew C. Wood, Daniel Rodriguez-Martin, Ingrid Pinel, Julian Parkhill, Eshwar Mahenthiralingam, John Crosby

JOURNAL OF BACTERIOLOGY (2017)

Article Chemistry, Multidisciplinary

Chemoenzymatic Assembly of Isotopically Labeled Folates

Antonio Angelastro, William M. Dawson, Louis Y. P. Luk, E. Joel Loveridge, Rudolf K. Allemann

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

Article Biotechnology & Applied Microbiology

Co-production of ethanol and squalene using a Saccharomyces cerevisiae ERG1 (squalene epoxidase) mutant and agro-industrial feedstock

Claire M. Hull, E. Joel Loveridge, Nicola J. Rolley, Iain S. Donnison, Steven L. Kelly, Diane E. Kelly

BIOTECHNOLOGY FOR BIOFUELS (2014)

Review Biotechnology & Applied Microbiology

CYP105-diverse structures, functions and roles in an intriguing family of enzymes in Streptomyces

Suzy C. Moody, E. Joel Loveridge

JOURNAL OF APPLIED MICROBIOLOGY (2014)

Article Chemistry, Multidisciplinary

Different Dynamical Effects in Mesophilic and Hyperthermophilic Dihydrofolate Reductases

Louis Y. P. Luk, E. Joel Loveridge, Rudolf K. Allemann

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Chemistry, Multidisciplinary

Protein Isotope Effects in Dihydrofolate Reductase From Geobacillus stearothermophilus Show Entropic-Enthalpic Compensatory Effects on the Rate Constant

Louis Y. P. Luk, J. Javier Ruiz-Pernia, William M. Dawson, E. Joel Loveridge, Inaki Tunon, Vicent Moliner, Rudolf K. Allemann

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Biotechnology & Applied Microbiology

Co-production of bioethanol and probiotic yeast biomass from agricultural feedstock: application of the rural biorefinery concept

Claire M. Hull, E. Joel Loveridge, Iain S. Donnison, Diane E. Kelly, Steven L. Kelly

AMB EXPRESS (2014)

Article Immunology

TCR-induced alteration of primary MHC peptide anchor residue

Florian Madura, Pierre J. Rizkallah, Mateusz Legut, Christopher J. Holland, Anna Fuller, Anna Bulek, Andrea J. Schauenburg, Andrew Trimby, Jade R. Hopkins, Stephen A. Wells, Andrew Godkin, John J. Miles, Malkit Sami, Yi Li, Nathaniel Liddy, Bent K. Jakobsen, E. Joel Loveridge, David K. Cole, Andrew K. Sewell

EUROPEAN JOURNAL OF IMMUNOLOGY (2019)

Review Chemistry, Physical

Synthetic routes, characterization and photophysical properties of luminescent, surface functionalized nanodiamonds

Adam H. Day, Samuel J. Adams, Laia Gines, Oliver A. Williams, Benjamin R. G. Johnson, Ian A. Fallis, E. Joel Loveridge, Gurmit S. Bahra, Petra C. F. Oyston, Juan Manuel Herrera, Simon J. A. Pope

CARBON (2019)

Review Biotechnology & Applied Microbiology

Fungal bioremediation of polyethylene: Challenges and perspectives

Andrew R. Cowan, Chiara M. Costanzo, Robert Benham, E. Joel Loveridge, Suzy C. Moody

Summary: Plastics, specifically polyethylene, are prevalent as materials and environmental pollutants due to long-term mass production and inadequate waste management. Current recycling and incineration processes are not sustainable solutions for tackling plastic waste, highlighting the need for the development of new waste-management technologies. Fungal-based biodegradation, particularly in relation to polyethylene, shows promise as a potential future solution to plastic waste.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

Article Biochemistry & Molecular Biology

A Rapid Analysis of Variations in Conformational Behavior during Dihydrofolate Reductase Catalysis

Robert L. Hughes, Luke A. Johnson, Enas M. Behiry, E. Joel Loveridge, Rudolf K. Allemann

BIOCHEMISTRY (2017)

Article Biochemistry & Molecular Biology

Reduction of Folate by Dihydrofolate Reductase from Thermotoga maritima

E. Joel Loveridge, Lukas Hroch, Robert L. Hughes, Thomas Williams, Rhidian L. Davies, Antonio Angelastro, Louis Y. P. Luk, Giovanni Maglia, Rudolf K. Allemann

BIOCHEMISTRY (2017)

No Data Available