Selective enrichment of newly synthesized proteins for quantitative secretome analysis

Serum starvation: caveat emptor

(2011) Sergej Pirkmajer et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Secretome Compartment Is a Valuable Source of Biomarkers for Cancer-Relevant Pathways

(2011) Dario Caccia et al.   JOURNAL OF PROTEOME RESEARCH

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Identification of low abundant secreted proteins and peptides from primary culture supernatants of human T-cells

(2011) Inez Finoulst et al.   Journal of Proteomics

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Quantitative Subcellular Proteome and Secretome Profiling of Influenza A Virus-Infected Human Primary Macrophages

(2011) Niina Lietzén et al.   PLoS Pathogens

Extracellular proteomes of M-CSF (CSF-1) and GM-CSF-dependent macrophages

(2010) Mark J Bailey et al.   IMMUNOLOGY AND CELL BIOLOGY

Secretome of Human Endothelial Cells under Shear Stress

(2010) Sandra Burghoff et al.   JOURNAL OF PROTEOME RESEARCH

Secretome proteomics for discovery of cancer biomarkers

(2010) Manousos Makridakis et al.   Journal of Proteomics

Conditioned media from cell lines: A complementary model to clinical specimens for the discovery of disease-specific biomarkers

(2010) Paul Dowling et al.   PROTEOMICS

Infrastructure for the life sciences: design and implementation of the UniProt website

(2009) Eric Jain et al.   BMC BIOINFORMATICS

Cytokine secretion in macrophages and other cells: Pathways and mediators

(2009) Jennifer L. Stow et al.   IMMUNOBIOLOGY

Metabolic Labeling and Protein Linearization Technology Allow the Study of Proteins Secreted by Cultured Cells in Serum-Containing Media

(2009) M. Colzani et al.   JOURNAL OF PROTEOME RESEARCH

Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome

(2009) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Different Changes in Protein and Phosphoprotein Levels Result from Serum Starvation of High-Grade Glioma and Adenocarcinoma Cell Lines

(2009) Victor A. Levin et al.   JOURNAL OF PROTEOME RESEARCH

Heme Oxygenase-1 Contributes to an Alternative Macrophage Activation Profile Induced by Apoptotic Cell Supernatants

(2009) Nicole Weis et al.   MOLECULAR BIOLOGY OF THE CELL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Proteomic Analysis of Conditioned Media from the PC3, LNCaP, and 22Rv1 Prostate Cancer Cell Lines: Discovery and Validation of Candidate Prostate Cancer Biomarkers

(2008) Girish Sardana et al.   JOURNAL OF PROTEOME RESEARCH

Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions

(2008) Cuiping Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

(2008) Judit Villén et al.   Nature Protocols

Global analysis of cellular protein translation by pulsed SILAC

(2008) Björn Schwanhäusser et al.   PROTEOMICS