Genomics of the origin and evolution of Citrus

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

(2017) Xia Wang et al.   NATURE GENETICS

Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers

(2016) Franck Curk et al.   ANNALS OF BOTANY

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes

(2016) Tokurou Shimizu et al.   PLoS One

Genomics and the Contrasting Dynamics of Annual and Perennial Domestication

(2015) Brandon S. Gaut et al.   TRENDS IN GENETICS

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Reconstructing chemical weathering, physical erosion and monsoon intensity since 25Ma in the northern South China Sea: A review of competing proxies

(2014) Peter D. Clift et al.   EARTH-SCIENCE REVIEWS

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

Late Miocene southwestern Chinese floristic diversity shaped by the southeastern uplift of the Tibetan Plateau

(2014) Frédéric M.B. Jacques et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Archaeological and genetic insights into the origins of domesticated rice

(2014) B. L. Gross et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Citrus linczangensis sp. n., a Leaf Fossil of Rutaceae from the Late Miocene of Yunnan, China

(2013) Sanping Xie et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

(2012) Amandine Cornille et al.   PLoS Genetics

From forest to field: Perennial fruit crop domestication

(2011) Allison J. Miller et al.   AMERICAN JOURNAL OF BOTANY

West to east dispersal and subsequent rapid diversification of the mega-diverse genus Begonia (Begoniaceae) in the Malesian archipelago

(2011) D. C. Thomas et al.   JOURNAL OF BIOGEOGRAPHY

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Quantitative reconstruction of the Late Miocene monsoon climates of southwest China: A case study of the Lincang flora from Yunnan Province

(2010) Frédéric M.B. Jacques et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A molecular phylogeny of the orange subfamily(Rutaceae: Aurantioideae) using nine cpDNA sequences

(2009) Randall J. Bayer et al.   AMERICAN JOURNAL OF BOTANY

Southeast Asia's changing palaeogeography

(2009) R. Hall   BLUMEA

The age and biogeography of Citrus and the orange subfamily (Rutaceae: Aurantioideae) in Australasia and New Caledonia

(2008) Bernard E. Pfeil et al.   AMERICAN JOURNAL OF BOTANY