The genetics of monarch butterfly migration and warning colouration

DETECTING RANGE EXPANSIONS FROM GENETIC DATA

(2013) Benjamin M. Peter et al.   EVOLUTION

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

PgiGenotype Influences Flight Metabolism at the Expanding Range Margin of the European Map Butterfly

(2012) Varpu Mitikka et al.   ANNALES ZOOLOGICI FENNICI

Lack of genetic differentiation between monarch butterflies with divergent migration destinations

(2012) JUSTINE I. LYONS et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MonarchBase: the monarch butterfly genome database

(2012) Shuai Zhan et al.   NUCLEIC ACIDS RESEARCH

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

Drosophila basement membrane collagen col4a1 mutations cause severe myopathy

(2011) Ildikó Kelemen-Valkony et al.   MATRIX BIOLOGY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Sun Compass Integration of Skylight Cues in Migratory Monarch Butterflies

(2011) Stanley Heinze et al.   NEURON

POPULATIONS OF MONARCH BUTTERFLIES WITH DIFFERENT MIGRATORY BEHAVIORS SHOW DIVERGENCE IN WING MORPHOLOGY

(2010) Sonia Altizer et al.   EVOLUTION

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Systematic genetic analysis of muscle morphogenesis and function in Drosophila

(2010) Frank Schnorrer et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Flight metabolic rate has contrasting effects on dispersal in the two sexes of the Glanville fritillary butterfly

(2010) Kristjan Niitepõld et al.   OECOLOGIA

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Navigational mechanisms of migrating monarch butterflies

(2010) Steven M. Reppert et al.   TRENDS IN NEUROSCIENCES

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Flight metabolic rate andPgigenotype influence butterfly dispersal rate in the field

(2009) Kristjan Niitepõld et al.   ECOLOGY

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

The Influence of Eastern North American Autumnal Migrant Monarch Butterflies (Danaus plexippus L.) on Continuously Breeding Resident Monarch Populations in Southern Florida

(2009) Amy Knight et al.   JOURNAL OF CHEMICAL ECOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Antennal Circadian Clocks Coordinate Sun Compass Orientation in Migratory Monarch Butterflies

(2009) C. Merlin et al.   SCIENCE

Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx)

(2009) Q. Xia et al.   SCIENCE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

genBlastA: Enabling BLAST to identify homologous gene sequences

(2008) R. She et al.   GENOME RESEARCH

The genome of a lepidopteran model insect, the silkworm Bombyx mori

(2008) The International Silkworm Genome   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Chasing Migration Genes: A Brain Expressed Sequence Tag Resource for Summer and Migratory Monarch Butterflies (Danaus plexippus)

(2008) Haisun Zhu et al.   PLoS One