Quantitative analysis of transient and sustained transforming growth factor-  signaling dynamics

SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models

(2011) Z. Zi   BIOINFORMATICS

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

(2010) Chen Li et al.   BMC Systems Biology

TMEPAI, a Transmembrane TGF-β-Inducible Protein, Sequesters Smad Proteins from Active Participation in TGF-β Signaling

(2010) Yukihide Watanabe et al.   MOLECULAR CELL

Informatics approaches to understanding TGF  pathway regulation

(2009) P. Kahlem et al.   DEVELOPMENT

Transforming Growth Factor   Depletion Is the Primary Determinant of Smad Signaling Kinetics

(2009) D. C. Clarke et al.   MOLECULAR AND CELLULAR BIOLOGY

SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool

(2008) Zhike Zi et al.   BMC BIOINFORMATICS

Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses

(2008) James E. Ferrell   CURRENT BIOLOGY

Mathematical modeling identifies Smad nucleocytoplasmic shuttling as a dynamic signal-interpreting system

(2008) B. Schmierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding the quantitative nature of TGF-β/Smad signaling

(2008) David C. Clarke et al.   TRENDS IN CELL BIOLOGY