SH3 interactome conserves general function over specific form

The Role of Structural Disorder in the Rewiring of Protein Interactions through Evolution

(2012) Roberto Mosca et al.   MOLECULAR & CELLULAR PROTEOMICS

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

(2012) Naomi Habib et al.   Molecular Systems Biology

Network Evolution: Rewiring and Signatures of Conservation in Signaling

(2012) Mark G. F. Sun et al.   PLoS Computational Biology

Rewiring of PDZ Domain-Ligand Interaction Network Contributed to Eukaryotic Evolution

(2012) Jinho Kim et al.   PLoS Genetics

Biological interaction networks are conserved at the module level

(2011) Guy E Zinman et al.   BMC Systems Biology

The multiple-specificity landscape of modular peptide recognition domains

(2011) D. Gfeller et al.   Molecular Systems Biology

Phosphorylation network rewiring by gene duplication

(2011) L. Freschi et al.   Molecular Systems Biology

Rapid and efficient clathrin-mediated endocytosis revealed in genome-edited mammalian cells

(2011) Jeffrey B. Doyon et al.   NATURE CELL BIOLOGY

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

(2011) B. Turner et al.   Database-The Journal of Biological Databases and Curation

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

(2010) D. Xie et al.   GENOME RESEARCH

SNX18 shares a redundant role with SNX9 and modulates endocytic trafficking at the plasma membrane

(2010) J. Park et al.   JOURNAL OF CELL SCIENCE

TBC-2 Regulates RAB-5/RAB-7-mediated Endosomal Trafficking in Caenorhabditis elegans

(2010) Laëtitia Chotard et al.   MOLECULAR BIOLOGY OF THE CELL

Protein evolution in yeast transcription factor subnetworks

(2010) Yong Wang et al.   NUCLEIC ACIDS RESEARCH

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination

(2010) S. G. Peisajovich et al.   SCIENCE

The cell migration molecule UNC-53/NAV2 is linked to the ARP2/3 complex by ABI-1

(2009) K. L. Schmidt et al.   DEVELOPMENT

C. elegans Rab GTPase activating protein TBC-2 promotes cell corpse degradation by regulating the small GTPase RAB-5

(2009) W. Li et al.   DEVELOPMENT

Shifted Transversal Design smart-pooling for high coverage interactome mapping

(2009) X. Xin et al.   GENOME RESEARCH

Src-Mediated Phosphorylation of Dynamin and Cortactin Regulates the "Constitutive" Endocytosis of Transferrin

(2009) H. Cao et al.   MOLECULAR AND CELLULAR BIOLOGY

Modularity of MAP kinases allows deformation of their signalling pathways

(2009) Areez Mody et al.   NATURE CELL BIOLOGY

AMPH-1/Amphiphysin/Bin1 functions with RME-1/Ehd1 in endocytic recycling

(2009) Saumya Pant et al.   NATURE CELL BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A complex-centric view of protein network evolution

(2009) Nir Yosef et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Positive Selection of Tyrosine Loss in Metazoan Evolution

(2009) C. S. H. Tan et al.   SCIENCE

Eukaryotic Protein Domains as Functional Units of Cellular Evolution

(2009) J. Jin et al.   Science Signaling

High-Resolution Fractionation of Signaling Endosomes Containing Different Receptors

(2009) Gretchen McCaffrey et al.   TRAFFIC

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

(2009) Raffi Tonikian et al.   PLOS BIOLOGY

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

(2008) Mike Boxem et al.   CELL

Evolvability and hierarchy in rewired bacterial gene networks

(2008) Mark Isalan et al.   NATURE

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans

(2008) Insuk Lee et al.   NATURE GENETICS

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Signaling networks assembled by oncogenic EGFR and c-Met

(2008) A. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

A Specificity Map for the PDZ Domain Family

(2008) Raffi Tonikian et al.   PLOS BIOLOGY

Protein Complex Evolution Does Not Involve Extensive Network Rewiring

(2008) Teunis J. P. van Dam et al.   PLoS Computational Biology