Reshaping the transcriptional frontier: Epigenetics and somatic cell nuclear transfer

Transcription Factor Binding in Human Cells Occurs in Dense Clusters Formed around Cohesin Anchor Sites

(2013) Jian Yan et al.   CELL

Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes

(2013) Warren A. Whyte et al.   CELL

Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes

(2013) Andrew B. Stergachis et al.   CELL

Successful Serial Recloning in the Mouse over Multiple Generations

(2013) Sayaka Wakayama et al.   Cell Stem Cell

NANOG-dependent function of TET1 and TET2 in establishment of pluripotency

(2013) Yael Costa et al.   NATURE

Epigenetic programming and reprogramming during development

(2013) Irene Cantone et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The transcriptomic architecture of mouse Sertoli cell clone embryos reveals temporal–spatial-specific reprogramming

(2013) Feng Cao et al.   REPRODUCTION

Chromatin and epigenetic modifications during early mammalian development

(2012) Karlla Mason et al.   ANIMAL REPRODUCTION SCIENCE

Influence of cloning by chromatin transfer on placental gene expression at Day 45 of pregnancy in cattle

(2012) Fernando S. Mesquita et al.   ANIMAL REPRODUCTION SCIENCE

Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase

(2012) Yosef Buganim et al.   CELL

Epigenetic reprogramming in somatic cells induced by extract from germinal vesicle stage pig oocytes

(2012) H.-T. Bui et al.   DEVELOPMENT

Epigenetics

(2012) James R. Tollervey et al.   Epigenetics

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

Incomplete methylation reprogramming in SCNT embryos

(2012) Julian R Peat et al.   NATURE GENETICS

Recent advancements in cloning by somatic cell nuclear transfer

(2012) A. Ogura et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

(2012) S. Seisenberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Aberrant placenta gene expression pattern in bovine pregnancies established after transfer of cloned or in vitro produced embryos

(2012) Dessie Salilew-Wondim et al.   PHYSIOLOGICAL GENOMICS

Reprogramming mammalian somatic cells

(2012) N. Rodriguez-Osorio et al.   THERIOGENOLOGY

Active DNA demethylation by Gadd45 and DNA repair

(2012) Christof Niehrs et al.   TRENDS IN CELL BIOLOGY

Epigenetic Landscape of Pluripotent Stem Cells

(2011) Ji Woong Han et al.   ANTIOXIDANTS & REDOX SIGNALING

Tet1 and Tet2 Regulate 5-Hydroxymethylcytosine Production and Cell Lineage Specification in Mouse Embryonic Stem Cells

(2011) Kian Peng Koh et al.   Cell Stem Cell

Pioneer transcription factors: establishing competence for gene expression

(2011) K. S. Zaret et al.   GENES & DEVELOPMENT

Examination of DNA methyltransferase expression in cloned embryos reveals an essential role for Dnmt1 in bovine development

(2011) Michael C. Golding et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes

(2011) Tian-Peng Gu et al.   NATURE

Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine

(2011) Khursheed Iqbal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Replication-Dependent Loss of 5-Hydroxymethylcytosine in Mouse Preimplantation Embryos

(2011) A. Inoue et al.   SCIENCE

Mammalian Genomic Imprinting

(2011) M. S. Bartolomei et al.   Cold Spring Harbor Perspectives in Biology

DNA methylation patterns in tissues from mid-gestation bovine foetuses produced by somatic cell nuclear transfer show subtle abnormalities in nuclear reprogramming.

(2010) Christine Couldrey et al.   BMC DEVELOPMENTAL BIOLOGY

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming

(2010) Nishant Singhal et al.   CELL

Effect of epigenetic regulation during swine embryogenesis and on cloning by nuclear transfer

(2010) Jianguo Zhao et al.   CELL AND TISSUE RESEARCH

Abnormal Levels of Transcript Abundance of Developmentally Important Genes in Various Stages of Preimplantation Bovine Somatic Cell Nuclear Transfer Embryos

(2010) Kenneth I. Aston et al.   Cellular Reprogramming

Reprogramming of Ovine Somatic Cells with Xenopus laevis Oocyte Extract Prior to SCNT Improves Live Birth Rate

(2010) Alex J. Rathbone et al.   Cellular Reprogramming

Histone Deacetylase Inhibitors Improve In Vitro and In Vivo Developmental Competence of Somatic Cell Nuclear Transfer Porcine Embryos

(2010) Jianguo Zhao et al.   Cellular Reprogramming

Acetylation Level of Histone H3 in Early Embryonic Stages Affects Subsequent Development of Miniature Pig Somatic Cell Nuclear Transfer Embryos

(2010) Ken-ichi YAMANAKA et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Treatment with a Histone Deacetylase Inhibitor after Nuclear Transfer Improves the Preimplantation Development of Cloned Bovine Embryos

(2010) Satoshi AKAGI et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Trichostatin A Promotes the Development of Bovine Somatic Cell Nuclear Transfer Embryos

(2010) Min-Jung LEE et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

A unique chromatin signature uncovers early developmental enhancers in humans

(2010) Alvaro Rada-Iglesias et al.   NATURE

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

(2010) Shinsuke Ito et al.   NATURE

The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing

(2010) Yun Huang et al.   PLoS One

Inter- and Intra-Individual Variation in Allele-Specific DNA Methylation and Gene Expression in Children Conceived using Assisted Reproductive Technology

(2010) Nahid Turan et al.   PLoS Genetics

Genomic imprinting: employing and avoiding epigenetic processes

(2009) M. S. Bartolomei   GENES & DEVELOPMENT

Direct cell reprogramming is a stochastic process amenable to acceleration

(2009) Jacob Hanna et al.   NATURE

The histone deacetylase inhibitor scriptaid enhances nascent mRNA production and rescues full-term development in cloned inbred mice

(2009) Nguyen Van Thuan et al.   REPRODUCTION

Inhibition of DNA methyltransferase 1 expression in bovine fibroblast cells used for nuclear transfer

(2009) Angelica M. Giraldo et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Transcript Levels of Several Epigenome Regulatory Genes in Bovine Somatic Donor Cells Are Not Correlated with Their Cloning Efficiency

(2009) Wenli Zhou et al.   Cloning Stem Cells

The cytoplasm of mouse germinal vesicle stage oocytes can enhance somatic cell nuclear reprogramming

(2008) H.-T. Bui et al.   DEVELOPMENT

Epigenetic reprogramming in embryonic and foetal development upon somatic cell nuclear transfer cloning

(2008) Heiner Niemann et al.   REPRODUCTION

Global gene expression analysis of bovine blastocysts produced by multiple methods

(2007) Wenli Zhou et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT