Lies and deception in bacterial gene regulation: the roles of nucleic acid decoys

The Transcription Factor Titration Effect Dictates Level of Gene Expression

(2014) Robert C. Brewster et al.   CELL

Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake inEscherichia coliandSalmonella

(2014) Jacqueline Plumbridge et al.   MOLECULAR MICROBIOLOGY

Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration

(2014) Mattias Rydenfelt et al.   PHYSICAL REVIEW E

The double-stranded transcriptome of Escherichia coli

(2014) M. Lybecker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ménage à trois

(2014) Yvonne Göpel et al.   RNA Biology

Competing endogenous RNAs (ceRNAs): new entrants to the intricacies of gene regulation

(2014) Reena V. Kartha et al.   Frontiers in Genetics

Block decoys: Transcription-factor decoys designed for in vitro gene regulation studies

(2013) Adam J. Brown et al.   ANALYTICAL BIOCHEMISTRY

Regulation of Bacterial Metabolism by Small RNAs Using Diverse Mechanisms

(2013) Maksym Bobrovskyy et al.   Annual Review of Genetics

The genome-wide binding profile of the Sulfolobus solfataricus transcription factor Ss-LrpB shows binding events beyond direct transcription regulation

(2013) Trong Nguyen-Duc et al.   BMC GENOMICS

Non-canonical protein-DNA interactions identified by ChIP are not artifacts

(2013) Richard P Bonocora et al.   BMC GENOMICS

Initial Symbiont Contact Orchestrates Host-Organ-wide Transcriptional Changes that Prime Tissue Colonization

(2013) Natacha Kremer et al.   Cell Host & Microbe

A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium

(2013) Torsten Sterzenbach et al.   EMBO JOURNAL

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon

(2013) A. M. Stringer et al.   JOURNAL OF BACTERIOLOGY

Emerging Roles of Competing Endogenous RNAs in Cancer: Insights from the Regulation of PTEN

(2013) A. de Giorgio et al.   MOLECULAR AND CELLULAR BIOLOGY

Regulation of natural competence by the orphan two-component system sensor kinase ChiS involves a non-canonical transmembrane regulator inVibrio cholerae

(2013) Shouji Yamamoto et al.   MOLECULAR MICROBIOLOGY

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miR-29 Acts as a Decoy in Sarcomas to Protect the Tumor Suppressor A20 mRNA from Degradation by HuR

(2013) M. Y. Balkhi et al.   Science Signaling

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems

(2012) Tony Romeo et al.   ENVIRONMENTAL MICROBIOLOGY

A role for Rho-dependent polarity in gene regulation by a noncoding small RNA

(2012) L. Bossi et al.   GENES & DEVELOPMENT

ThechbGGene of the Chitobiose (chb) Operon of Escherichia coli Encodes a Chitooligosaccharide Deacetylase

(2012) Subhash Chandra Verma et al.   JOURNAL OF BACTERIOLOGY

A regulatory role for repeated decoy transcription factor binding sites in target gene expression

(2012) Tek-Hyung Lee et al.   Molecular Systems Biology

Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli

(2012) Z. Qian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma

(2011) Pavel Sumazin et al.   CELL

The PurR regulon in Escherichia coli K-12 MG1655

(2011) Byung-Kwan Cho et al.   NUCLEIC ACIDS RESEARCH

Genome-wide transcription factor binding: beyond direct target regulation

(2011) Kyle L. MacQuarrie et al.   TRENDS IN GENETICS

ChIP on Chip: surprising results are often artifacts

(2010) Torsten Waldminghaus et al.   BMC GENOMICS

Abduction and asylum in the lives of transcription factors

(2010) A. Burger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Widespread Antisense Transcription in Escherichia coli

(2010) J. E. Dornenburg et al.   mBio

Redefining MicroRNA Targets

(2009) Hervé Seitz   CURRENT BIOLOGY

Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

(2009) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Switching off small RNA regulation with trap-mRNA

(2009) Martin Overgaard et al.   MOLECULAR MICROBIOLOGY

A conserved small RNA promotes silencing of the outer membrane protein YbfM

(2009) Anders Aamann Rasmussen et al.   MOLECULAR MICROBIOLOGY

Repression ofgalP, the galactose transporter inEscherichia coli, requires the specific regulator ofN-acetylglucosamine metabolism

(2008) Samir El Qaidi et al.   MOLECULAR MICROBIOLOGY

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH