Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistentMycobacterium abscessus

Respiratory Outbreak ofMycobacterium abscessusSubspeciesmassiliensein a Lung Transplant and Cystic Fibrosis Center

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Mycobacterium abscessus isolated from municipal water - a potential source of human infection

(2013) Rachel Thomson et al.   BMC INFECTIOUS DISEASES

Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

(2013) Josephine M Bryant et al.   LANCET

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

(2013) Philip Supply et al.   NATURE GENETICS

Molecular Longitudinal Tracking of Mycobacterium abscessus spp. during Chronic Infection of the Human Lung

(2013) Kaj M. Kreutzfeldt et al.   PLoS One

The Mycobacterium DosR regulon structure and diversity revealed by comparative genomic analysis

(2012) Tian Chen et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Disruption of the ESX-5 system of Mycobacterium tuberculosis causes loss of PPE protein secretion, reduction of cell wall integrity and strong attenuation

(2012) Daria Bottai et al.   MOLECULAR MICROBIOLOGY

Virulence of Mycobacterium tuberculosis Depends on Lipoamide Dehydrogenase, a Member of Three Multienzyme Complexes

(2011) Aditya Venugopal et al.   Cell Host & Microbe

Expanding the mycobacterial diversity of metalworking fluids (MWFs): evidence showing MWF colonization by Mycobacterium abscessus

(2011) Renuka Kapoor et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative Genomics of the Dormancy Regulons in Mycobacteria

(2011) A. Gerasimova et al.   JOURNAL OF BACTERIOLOGY

Demonstration of Cord Formation by Rough Mycobacterium abscessus Variants: Implications for the Clinical Microbiology Laboratory: Fig. 1.

(2011) Alejandro Sánchez-Chardi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Deletion of the mmpL4b gene in the Mycobacterium abscessus glycopeptidolipid biosynthetic pathway results in loss of surface colonization capability, but enhanced ability to replicate in human macrophages and stimulate their innate immune response

(2011) R. Nessar et al.   MICROBIOLOGY-SGM

Sequencing Illustrates the Transcriptional Response of Legionella pneumophila during Infection and Identifies Seventy Novel Small Non-Coding RNAs

(2011) Barbara A. Weissenmayer et al.   PLoS One

Overexpression of proinflammatory TLR-2-signalling lipoproteins in hypervirulent mycobacterial variants

(2010) Anne-Laure Roux et al.   CELLULAR MICROBIOLOGY

Lung transplantation in patients with cystic fibrosis and Mycobacterium abscessus infection

(2010) Marita Gilljam et al.   Journal of Cystic Fibrosis

Comparative genomics analysis of Mycobacterium NrdH-redoxins

(2010) W.U. Leiting et al.   MICROBIAL PATHOGENESIS

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

(2010) Iñaki Comas et al.   NATURE GENETICS

Bacterial phenylalanine and phenylacetate catabolic pathway revealed

(2010) R. Teufel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel Gene, erm(41), Confers Inducible Macrolide Resistance to Clinical Isolates of Mycobacterium abscessus but Is Absent from Mycobacterium chelonae

(2009) K. A. Nash et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MapView: visualization of short reads alignment on a desktop computer

(2009) H. Bao et al.   BIOINFORMATICS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Multicenter Study of Prevalence of Nontuberculous Mycobacteria in Patients with Cystic Fibrosis in France

(2009) A.-L. Roux et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Cohort Study of Molecular Identification and Typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii

(2009) A. M. Zelazny et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Mycobacterium abscessus Glycopeptidolipids Mask Underlying Cell Wall Phosphatidyl-myo-Inositol Mannosides Blocking Induction of Human Macrophage TNF-  by Preventing Interaction with TLR2

(2009) E. R. Rhoades et al.   JOURNAL OF IMMUNOLOGY

Transcriptome analysis by strand-specific sequencing of complementary DNA

(2009) Dmitri Parkhomchuk et al.   NUCLEIC ACIDS RESEARCH

Non Mycobacterial Virulence Genes in the Genome of the Emerging Pathogen Mycobacterium abscessus

(2009) Fabienne Ripoll et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Construction of Mycobacterium abscessus Defined Glycopeptidolipid Mutants: Comparison of Genetic Tools

(2008) H. Medjahed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The cell surface-exposed glycopeptidolipids confer a selective advantage to the smooth variants ofMycobacterium smegmatis in vitro

(2008) Dana Kocíncová et al.   FEMS MICROBIOLOGY LETTERS

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Acute Respiratory Failure Involving an R Variant of Mycobacterium abscessus

(2008) E. Catherinot et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic Surgeries and Cosmetic Procedures

(2008) C. Viana-Niero et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of genetic variants using bar-coded multiplexed sequencing

(2008) David W Craig et al.   NATURE METHODS