Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds

(2014) Songbai Yang et al.   BMC GENETICS

JMJD1C, a JmjC Domain-Containing Protein, Is Required for Long-Term Maintenance of Male Germ Cells in Mice1

(2013) Shunsuke Kuroki et al.   BIOLOGY OF REPRODUCTION

Insertion of long interspersed element-1 in theMitfgene is associated with altered neurobehavior of the black-eyed whiteMitfmi-bwmouse

(2013) Kazuhisa Takeda et al.   GENES TO CELLS

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

(2013) Mingzhou Li et al.   NATURE GENETICS

Genetic Diversity, Linkage Disequilibrium and Selection Signatures in Chinese and Western Pigs Revealed by Genome-Wide SNP Markers

(2013) Huashui Ai et al.   PLoS One

Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men

(2012) Guangfu Jin et al.   HUMAN MOLECULAR GENETICS

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutations in MITF and PAX3 Cause “Splashed White” and Other White Spotting Phenotypes in Horses

(2012) Regula Hauswirth et al.   PLoS Genetics

Association study and expression analysis of porcine ESR1 as a candidate gene for boar fertility and sperm quality

(2011) Asep Gunawan et al.   ANIMAL REPRODUCTION SCIENCE

Genetic and functional evaluation of MITF as a candidate gene for cutaneous melanoma predisposition in pigs

(2011) Emmanuelle Bourneuf et al.   MAMMALIAN GENOME

A MITF Mutation Associated with a Dominant White Phenotype and Bilateral Deafness in German Fleckvieh Cattle

(2011) Ute Philipp et al.   PLoS One

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA

(2010) Greger Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Deletion of the Novel Oocyte-Enriched Gene,Gpr149, Leads to Increased Fertility in Mice

(2009) Mark A. Edson et al.   ENDOCRINOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

(2009) Meiying Fang et al.   PLoS Genetics

Transcriptional and signaling regulation in neural crest stem cell-derived melanocyte development: do all roads lead to Mitf?

(2008) Ling Hou et al.   CELL RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH