Single-nucleotide polymorphism discovery inLeptographium longiclavatum, a mountain pine beetle-associated symbiotic fungus, using whole-genome resequencing

Unequal Recombination and Evolution of the Mating-Type ( MAT ) Loci in the Pathogenic Fungus Grosmannia clavigera and Relatives

(2013) Clement K.-M. Tsui et al.   G3-Genes Genomes Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Breach of the northern Rocky Mountain geoclimatic barrier: initiation of range expansion by the mountain pine beetle

(2012) Honey-Marie C. de la Giroday et al.   JOURNAL OF BIOGEOGRAPHY

Triallelic SNP-mediated genotyping of regenerated protoplasts of the heterokaryotic fungus Rhizoctonia solani

(2012) Elizabeth Thomas et al.   JOURNAL OF BIOTECHNOLOGY

SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection

(2012) Charlotte Tollenaere et al.   PLoS One

Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus

(2011) M.W. Syrmis et al.   CLINICAL MICROBIOLOGY AND INFECTION

Climate change could alter the distribution of mountain pine beetle outbreaks in western Canada

(2011) Kishan R. Sambaraju et al.   ECOGRAPHY

Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry-Based Single Nucleotide Polymorphism Genotyping Assay Using iPLEX Gold Technology for Identification of Mycobacterium tuberculosis Complex Species and Lineages

(2011) C. Bouakaze et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Spatial Community Structure of Mountain Pine Beetle Fungal Symbionts Across a Latitudinal Gradient

(2011) Amanda D. Roe et al.   MICROBIAL ECOLOGY

Population structure and migration pattern of a conifer pathogen,Grosmannia clavigera, as influenced by its symbiont, the mountain pine beetle

(2011) CLEMENT K. M. TSUI et al.   MOLECULAR ECOLOGY

Mountain pine beetle host-range expansion threatens the boreal forest

(2011) CATHERINE I. CULLINGHAM et al.   MOLECULAR ECOLOGY

Gene genealogies reveal cryptic species and host preferences for the pine fungal pathogen Grosmannia clavigera

(2011) SEPIDEH M. ALAMOUTI et al.   MOLECULAR ECOLOGY

Discovery of single-nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete Ophiognomonia clavigignenti-juglandacearum from 454 sequence data

(2011) K. D. BRODERS et al.   Molecular Ecology Resources

Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction

(2011) YONG-BI FU et al.   Molecular Ecology Resources

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing

(2011) ARMANDO GERALDES et al.   Molecular Ecology Resources

Spatial Genetic Structure of a Symbiotic Beetle-Fungal System: Toward Multi-Taxa Integrated Landscape Genetics

(2011) Patrick M. A. James et al.   PLoS One

Genotyping Performance Assessment of Whole Genome Amplified DNA with Respect to Multiplexing Level of Assay and Its Period of Storage

(2011) Daniel W. H. Ho et al.   PLoS One

Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

(2011) S. DiGuistini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera

(2010) Uljana Hesse-Orce et al.   BMC GENOMICS

Development of a SNP genetic marker system based on variation in microsatellite flanking regions ofPhytophthora infestans

(2010) C. L. Abbott et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Development of a single-nucleotide polymorphism (SNP) assay for genotyping of Pandora neoaphidis

(2010) A. Fournier et al.   Fungal Biology

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

Comparative phylogeography, genetic differentiation and contrasting reproductive modes in three fungal symbionts of a multipartite bark beetle symbiosis

(2010) AMANDA D. ROE et al.   MOLECULAR ECOLOGY

Characterization of duplicate gene evolution in the recent natural allopolyploidTragopogon miscellusby next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

(2010) RICHARD J. A. BUGGS et al.   MOLECULAR ECOLOGY

Genome-wide SNP detection in the great titParus majorusing high throughput sequencing

(2010) NIKKIE E. M. VAN BERS et al.   MOLECULAR ECOLOGY

Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle

(2010) AMANDA D. ROE et al.   Molecular Ecology Resources

Application of single nucleotide polymorphisms to non-model species: a technical review

(2010) M. R. GARVIN et al.   Molecular Ecology Resources

Multiplex single nucleotide polymorphism (SNP) assay for detection of soybean mosaic virus resistance genes in soybean

(2010) Ainong Shi et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Mountain pine beetle and forest carbon feedback to climate change

(2008) W. A. Kurz et al.   NATURE