Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza)

Inferring the origins of lowland Neotropical birds

(2012)   AUK

Climatic oscillations shape the phylogeographical structure of Atlantic Forest fire-eye antbirds (Aves: Thamnophilidae)

(2012) MARCOS MALDONADO-COELHO   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Evaluating forest refugial models using species distribution models, model filling and inclusion: a case study with 14 Brazilian species

(2012) Tiago Jordão Porto et al.   DIVERSITY AND DISTRIBUTIONS

Assessing model fit in phylogeographical investigations: an example from the North American sandbar willowSalix melanopsis

(2012) Yi-Hsin Erica Tsai et al.   JOURNAL OF BIOGEOGRAPHY

A simple and effective air shotgun for collecting small birds and other vertebrates at close range

(2012) Fábio Raposo do Amaral et al.   JOURNAL OF FIELD ORNITHOLOGY

Phylogeography of an Atlantic forest passerine reveals demographic stability through the last glacial maximum

(2012) Henrique Batalha-Filho et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eight anonymous nuclear loci for the squamate antbird (Myrmeciza squamosa), cross-amplifiable in other species of typical antbirds (Aves, Thamnophilidae)

(2012) Fábio Raposo do Amaral et al.   Conservation Genetics Resources

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Limits to Speciation Inferred from Times to Secondary Sympatry and Ages of Hybridizing Species along a Latitudinal Gradient

(2011) Jason T. Weir et al.   AMERICAN NATURALIST

Evolution of Dendrocolaptes platyrostris (Aves: Furnariidae) between the South American open vegetation corridor and the Atlantic forest

(2011) GUSTAVO S. CABANNE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Historical biogeography of the Brazilian Atlantic forest and the Carnaval-Moritz model of Pleistocene refugia: what do phylogeographical studies tell us?

(2011) FELIPE DE MELLO MARTINS   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

LINEAGE DIVERSIFICATION AND MORPHOLOGICAL EVOLUTION IN A LARGE-SCALE CONTINENTAL RADIATION: THE NEOTROPICAL OVENBIRDS AND WOODCREEPERS (AVES: FURNARIIDAE)

(2011) Elizabeth P. Derryberry et al.   EVOLUTION

The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine

(2011) FERNANDO M. D’HORTA et al.   MOLECULAR ECOLOGY

Demographic processes in the montane Atlantic rainforest: Molecular and cytogenetic evidence from the endemic frog Proceratophrys boiei

(2011) Renata Cecília Amaro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Revising Species Limits in a Group ofMyrmecizaAntbirds Reveals a Cryptic Species WithinM. Laemosticta(Thamnophilidae)

(2010) Juan Camilo Chaves et al.   CONDOR

NUCLEAR AND MITOCHONDRIAL SEQUENCE DATA REVEAL AND CONCEAL DIFFERENT DEMOGRAPHIC HISTORIES AND POPULATION GENETIC PROCESSES IN CARIBBEAN REEF FISHES

(2010) Ron I. Eytan et al.   EVOLUTION

Gene and species trees of a Neotropical group of treefrogs: Genetic diversification in the Brazilian Atlantic Forest and the origin of a polyploid species

(2010) Tuliana O. Brunes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest

(2010) Maria Tereza C. Thomé et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Character displacement from the receiver's perspective: species and mate recognition despite convergent signals in suboscine birds

(2010) N. Seddon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The Brazilian Atlantic Forest: How much is left, and how is the remaining forest distributed? Implications for conservation

(2009) Milton Cezar Ribeiro et al.   BIOLOGICAL CONSERVATION

Phylogeography of the common vampire bat (Desmodus rotundus): Marked population structure, Neotropical Pleistocene vicariance and incongruence between nuclear and mtDNA markers

(2009) Felipe M Martins et al.   BMC EVOLUTIONARY BIOLOGY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability

(2009) SARAH W. FITZPATRICK et al.   MOLECULAR ECOLOGY

Computation vs. cloning: evaluation of two methods for haplotype determination

(2009) RYAN J. HARRIGAN et al.   Molecular Ecology Resources

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Molecular phylogeny and biogeography of the eastern Tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): Cryptic diversification in Brazilian Atlantic Forest

(2009) Helena Mata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns and processes of diversification in a widespread and ecologically diverse avian group, the buteonine hawks (Aves, Accipitridae)

(2009) Fábio Raposo do Amaral et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Identification and dynamics of a cryptic suture zone in tropical rainforest

(2009) C Moritz et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

(2009) A. C. Carnaval et al.   SCIENCE

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation

(2009) Rebecca J. Rundell et al.   TRENDS IN ECOLOGY & EVOLUTION

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic forest

(2008) Ana Carolina Carnaval et al.   JOURNAL OF BIOGEOGRAPHY

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation timing and neotropical biodiversity: the Tertiary-Quaternary debate in the light of molecular phylogenetic evidence

(2008) VALENTÍ RULL   MOLECULAR ECOLOGY

Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): Biogeography and systematics implications

(2008) G CABANNE et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION