4.6 Article

Identification of quantitative trait loci for resistance to powdery mildew in a Spanish barley landrace

Journal

MOLECULAR BREEDING
Volume 25, Issue 4, Pages 581-592

Publisher

SPRINGER
DOI: 10.1007/s11032-009-9354-z

Keywords

Barley; Powdery mildew; Disease resistance; Quantitative trait locus

Funding

  1. Spanish Ministry of Education and Research [AGL2007-63625]
  2. European Regional Development Fund
  3. CSIC
  4. IAMZ-CIHEAM

Ask authors/readers for more resources

The Spanish landrace-derived inbred line SBCC97, together with other lines from the Spanish Barley Core Collection, displays high resistance to powdery mildew, caused by the fungus Blumeria graminis f. sp. hordei. The objective of this study was to map quantitative trait loci (QTLs) for resistance to powdery mildew in a recombinant inbred line population derived from a cross between SBCC97 and the susceptible cultivar 'Plaisant'. Phenotypic analysis was performed using four B. graminis isolates, and genetic maps were constructed with mainly simple sequence repeat (SSR) markers, following a sequential genotyping strategy. Two major QTLs with large effects were identified on chromosome 7H, and they accounted for up to 45% of the total phenotypic variance. The alleles for resistance at each QTL were contributed by the Spanish parent SBCC97. One locus was mapped to the short arm of chromosome 7HS, and was flanked by the resistance gene analogue (RGA) marker S9202 and the SSR GBM1060. This corresponded to the same chromosomal region in which a major race-specific resistance gene from Hordeum vulgare ssp. spontaneum, designated as mlt, had been identified previously. The second QTL was linked tightly to marker EBmac0755, and it shared its chromosomal location with the qualitative resistance gene Mlf, which has only been described previously in the wild ancestor H. spontaneum. This is the first report of these two QTLs occurring together in cultivated barley, and it paves the way for their use in barley breeding programs that are designed to transfer resistance alleles into elite cultivars.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Review Agronomy

Major flowering time genes of barley: allelic diversity, effects, and comparison with wheat

Miriam Fernandez-Calleja, Ana M. Casas, Ernesto Igartua

Summary: This review summarizes the allelic series, effects, and interactions between genes and with the environment for the major flowering time genes in barley, providing insights for plant breeders to manipulate flowering time for improved phenological adaptation.

THEORETICAL AND APPLIED GENETICS (2021)

Article Plant Sciences

Responses of Barley to High Ambient Temperature Are Modulated by Vernalization

Helga Ochagavia, Tibor Kiss, Ildiko Karsai, Ana M. Casas, Ernesto Igartua

Summary: Climate change-induced rising temperatures affect cereal crop development. This study explored the developmental responses of barley to temperature increase and identified the interaction between flowering time, vernalization, and specific genes. The findings provide valuable information for breeding high-yielding cultivars adapted to future climatic conditions.

FRONTIERS IN PLANT SCIENCE (2022)

Article Plant Sciences

Hybrids Provide More Options for Fine-Tuning Flowering Time Responses of Winter Barley

Miriam Fernandez-Calleja, Francisco J. Ciudad, Ana M. Casas, Ernesto Igartua

Summary: This study investigates the vernalization sensitivity and phenotypic characteristics of barley in order to adapt to future climate change. The results show that the vernalization response in barley is mainly concentrated in the phase before stem elongation, and is influenced by multiple major genes. Additionally, the duration of the late reproductive phase is also affected by other genes.

FRONTIERS IN PLANT SCIENCE (2022)

Article Agronomy

Identification of adapted breeding lines to improve barley hybrids for Spain

Miriam Fernandez-Calleja, Christophe Boutin, Emmanuelle Dyrszka, Yann Manes, Jochen C. Reif, Yusheng Zhao, Nieves Aparicio, Francisco J. Ciudad, Ana M. Casas, Ernesto Igartua

Summary: This study investigates the potential of Spanish germplasm for creating hybrids suitable for southern Europe, an untapped region for hybrid barley. A total of 140 locally adapted, advanced breeding lines from a Spanish breeding program were examined to expand the germplasm options for hybrid barley development. Through field trials and genomic predictions, lines with high general combining ability were identified for potential two-way hybrid production. The presence of brittle mutations in hybrid combinations, discovered through field trials, underscored the need for further research on heterotic patterns and proper management of brittle genes to broaden the germplasm pool for hybrid barley breeding.

CROP SCIENCE (2023)

Article Plant Sciences

Multi-environment genome -wide association mapping of culm morphology traits in barley

Gianluca Bretani, Salar Shaaf, Alessandro Tondelli, Luigi Cattivelli, Stefano Delbono, Robbie Waugh, William Thomas, Joanne Russell, Hazel Bull, Ernesto Igartua, Ana M. M. Casas, Pilar Gracia, Roberta Rossi, Alan H. H. Schulman, Laura Rossini

Summary: In this study, a total of 261 barley accessions were phenotyped for culm diameter and culm wall thickness using an image analysis-based protocol. Genome-wide association studies revealed 192 quantitative trait loci (QTLs) associated with these traits, including 21 loci that impact lodging without affecting plant height. This research provides insights into the genetic control of culm morphology in barley and highlights the potential for improving lodging resistance and yield stability.

FRONTIERS IN PLANT SCIENCE (2022)

Article Plant Sciences

Tracing Back the History of Pepper (Capsicum annuum) in the Iberian Peninsula from a Phenomics Point of View

Cristina Silvar, Filomena Rocha, Ana M. Barata

Summary: The Iberian Peninsula played a crucial role in the introduction and diversification of pepper in Europe. This study examined the phenotypic diversity of Iberian peppers using high-throughput phenotyping tools and found a close relationship between Iberian and American peppers. The study also suggested that Portuguese and Spanish landraces may have originated from ancient American populations and adapted to local soil and climate conditions.

PLANTS-BASEL (2022)

Review Plant Sciences

Sense in sensitivity: difference in the meaning of photoperiod insensitivity between wheat and barley

Gustavo A. Slafer, Ana M. Casas, Ernesto Igartua

Summary: This article reviews the contrasting meaning of photoperiod insensitivity for wheat and barley, examines its molecular bases, and provides recommendations for managing this trait in research.

JOURNAL OF EXPERIMENTAL BOTANY (2023)

Article Agronomy

Assessing Drought Tolerance of Newly Developed Tissue-Cultured Canola Genotypes under Varying Irrigation Regimes

Nahid A. A. Morsi, Omnia S. M. Hashem, Mohamed A. Abd El-Hady, Yasser M. M. Abd-Elkrem, Mohamed E. E. El-temsah, Elhussin G. G. Galal, Khaled I. I. Gad, Ridha Boudiar, Cristina Silvar, Salah El-Hendawy, Elsayed Mansour, Mohamed A. A. Abdelkader

Summary: Drought is a major abiotic stress that affects canola growth, production, and quality. Developing drought-tolerant and high-yielding canola genotypes is critical for sustaining production and ensuring global food security. This study evaluated ten canola genotypes under different irrigation regimes and found that certain tissue-cultured and exotic genotypes performed better than commercial cultivars under water-deficit conditions.

AGRONOMY-BASEL (2023)

Article Plant Sciences

Response of Diverse Peanut Cultivars to Nano and Conventional Calcium Forms under Alkaline Sandy Soil

Mohamed E. El-temsah, Yasser M. Abd-Elkrem, Yasser A. El-Gabry, Mohamed A. Abdelkader, Nahid A. A. Morsi, Noura M. Taha, Shaimaa H. Abd-Elrahman, Fadl A. E. Hashem, Mostafa G. Shahin, Gomaa A. Abd El-Samad, Ridha Boudiar, Cristina Silvar, Salah El-Hendawy, Elsayed Mansour, Mohamed A. Abd El-Hady

Summary: This study assessed the effects of different calcium fertilizers on the growth, yield, and quality traits of peanuts. The results showed that foliar-applied nano-calcium combined with calcium nitrate or calcium sulfate had superior effects on peanut growth and yield. Additionally, the peanut cultivar Giza-6 exhibited better performance compared to the other cultivars. The research highlights the importance of calcium application for peanut cultivation, particularly in sandy soil with high pH.

PLANTS-BASEL (2023)

Article Biotechnology & Applied Microbiology

GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation

Bruno Contreras-Moreira, Shradha Saraf, Guy Naamati, Ana M. Casas, Sandeep S. Amberkar, Paul Flicek, Andrew R. Jones, Sarah Dyer

Summary: This study proposes a crop pangenome approach using individual cultivar assemblies to access conserved genes more easily. However, the variability in genome content and inconsistent identifiers have hindered exploration. To overcome these challenges, the concept of pangenes is introduced to summarize a species coding potential and link back to original annotations. The protocol get_pangenes utilizes whole genome alignments to identify syntenic gene models based on coordinate overlaps. Benchmark tests with both small and large plant genomes demonstrate that pangenes accurately recapitulate phylogeny-based orthologies and generate complete soft-core gene sets.

GENOME BIOLOGY (2023)

No Data Available