Uncovering allosteric pathways in caspase-1 using Markov transient analysis and multiscale community detection

Substrate and Inhibitor-induced Dimerization and Cooperativity in Caspase-1 but Not Caspase-3

(2013) Debajyoti Datta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Markov Dynamics as a Zooming Lens for Multiscale Community Detection: Non Clique-Like Communities and the Field-of-View Limit

(2012) Michael T. Schaub et al.   PLoS One

Modeling allosteric signal propagation using protein structure networks

(2011) Keunwan Park et al.   BMC BIOINFORMATICS

Stability of graph communities across time scales

(2010) J.- C. Delvenne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework

(2010) Pavel I. Zhuravlev et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Dynamical networks in tRNA:protein complexes

(2009) A. Sethi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways

(2009) Antonio del Sol et al.   STRUCTURE

Perturbation-based Markovian Transmission Model for Probing Allosteric Dynamics of Large Macromolecular Assembling: A Study of GroEL-GroES

(2009) Hsiao-Mei Lu et al.   PLoS Computational Biology

An Allosteric Circuit in Caspase-1

(2008) Debajyoti Datta et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Caspases in apoptosis and beyond

(2008) J Li et al.   ONCOGENE

Robustness of community structure in networks

(2008) Brian Karrer et al.   PHYSICAL REVIEW E

Allostery and cooperativity revisited

(2008) Qiang Cui et al.   PROTEIN SCIENCE

Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis

(2008) Yifei Kong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS