A multi-omic systems approach to elucidating Yersinia virulence mechanisms

Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

(2012) Alexandra C. Schrimpe-Rutledge et al.   PLoS One

A Statistical Method for Assessing Peptide Identification Confidence in Accurate Mass and Time Tag Proteomics

(2011) Jeffrey R. Stanley et al.   ANALYTICAL CHEMISTRY

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella

(2011) Hyunjin Yoon et al.   BMC Systems Biology

Yersiniabactin iron uptake: mechanisms and role in Yersinia pestis pathogenesis

(2011) Robert D. Perry et al.   MICROBES AND INFECTION

Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics

(2011) Young-Mo Kim et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Glutamate dehydrogenase and glutamine synthetase are regulated in response to nitrogen availability in Myocbacterium smegmatis

(2010) Catriona J Harper et al.   BMC MICROBIOLOGY

The Dependence of theYersiniapestisCapsule on Pathogenesis Is Influenced by the Mouse Background

(2010) Eric H. Weening et al.   INFECTION AND IMMUNITY

The Small RNA Chaperone Hfq Is Required for the Virulence of Yersinia pseudotuberculosis

(2010) C. A. Schiano et al.   INFECTION AND IMMUNITY

Transit through the Flea Vector Induces a Pretransmission Innate Immunity Resistance Phenotype in Yersinia pestis

(2010) Viveka Vadyvaloo et al.   PLoS Pathogens

MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis

(2009) Karsten Hiller et al.   ANALYTICAL CHEMISTRY

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Correlations between RNA and protein expression profiles in 23 human cell lines

(2009) Marcus Gry et al.   BMC GENOMICS

Global Systems-Level Analysis of Hfq and SmpB Deletion Mutants in Salmonella: Implications for Virulence and Global Protein Translation

(2009) Charles Ansong et al.   PLoS One

Involvement of the Post-Transcriptional Regulator Hfq in Yersinia pestis Virulence

(2009) Jing Geng et al.   PLoS One

The NlpD Lipoprotein Is a Novel Yersinia pestis Virulence Factor Essential for the Development of Plague

(2009) Avital Tidhar et al.   PLoS One

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC–MS(/MS) features

(2008) Matthew E. Monroe et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The Yersinia pestis caf1M1A1 Fimbrial Capsule Operon Promotes Transmission by Flea Bite in a Mouse Model of Bubonic Plague

(2008) F. Sebbane et al.   INFECTION AND IMMUNITY

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics

Fully Automated Four-Column Capillary LC−MS System for Maximizing Throughput in Proteomic Analyses

(2007) Eric A. Livesay et al.   ANALYTICAL CHEMISTRY