Metabolic flux ratio analysis and multi-objective optimization revealed a globally conserved and coordinated metabolic response of E. coli to paraquat-induced oxidative stress

Effect of tellurite-mediated oxidative stress on the Escherichia coli glycolytic pathway

(2012) Mauricio Valdivia-González et al.   BIOMETALS

13C-flux Analysis Reveals NADPH-balancing Transhydrogenation Cycles in Stationary Phase of Nitrogen-starvingBacillus subtilis

(2012) Martin Rühl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data

(2012) Yoshihiro Toya et al.   Molecular BioSystems

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

(2012) J. M. Buescher et al.   SCIENCE

Genetic polymorphisms in folate pathway enzymes, DRD4 and GSTM1 are related to temporomandibular disorder

(2011) Angel Aneiros-Guerrero et al.   BMC Medical Genetics

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Glucose-6-Phosphate Dehydrogenase Protects Escherichia coli from Tellurite-Mediated Oxidative Stress

(2011) Juan M. Sandoval et al.   PLoS One

A mathematical model for adaptive prediction of environmental changes by microorganisms

(2011) A. Mitchell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress

(2010) Bin Rui et al.   BMC Systems Biology

Soft constraints-based multiobjective framework for flux balance analysis

(2010) Deepak Nagrath et al.   METABOLIC ENGINEERING

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

(2010) Xuewen Chen et al.   METABOLIC ENGINEERING

Proteomic profiling of the differentially expressed proteins by TiO2 nanoparticles in mouse kidney

(2010) Yu-Mi Jeon et al.   Molecular & Cellular Toxicology

Transcriptomic Response of Escherichia coli O157:H7 to Oxidative Stress

(2009) S. Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiobjective flux balancing using the NISE method for metabolic network analysis

(2009) Young-Gyun Oh et al.   BIOTECHNOLOGY PROGRESS

13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

(2009) Paula Jouhten et al.   BMC Systems Biology

What Is the Metabolic Role of Phosphoenolpyruvate Carboxykinase?

(2009) Jianqi Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Loss of PINK1 Function Promotes Mitophagy through Effects on Oxidative Stress and Mitochondrial Fission

(2009) Ruben K. Dagda et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adaptive prediction of environmental changes by microorganisms

(2009) Amir Mitchell et al.   NATURE

Cellular Defenses against Superoxide and Hydrogen Peroxide

(2008) James A. Imlay   Annual Review of Biochemistry

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A

(2008) Paula Jouhten et al.   BMC Systems Biology