Naïve Bayes QSDR classification based on spiral-graph Shannon entropies for protein biomarkers in human colon cancer

Definition of Markov-Harary Invariants and Review of Classic Topological Indices and Databases in Biology, Parasitology, Technology,and Social-Legal Networks

(2012) Pablo Riera-Fernandez et al.   Current Bioinformatics

Investigation into Adamantane-Based M2 Inhibitors with FB-QSAR

(2012) Hang Wei et al.   Medicinal Chemistry

The Structural Determinations of the Leucine Zipper Coiled-Coil Domains of the cGMP-Dependent Protein Kinase Iα and Its Interaction with the Myosin Binding Subunit of the Myosin Light Chains Phosphase

(2012) Guo-Ping Zhou   PROTEIN AND PEPTIDE LETTERS

Model building and intelligent acquisition with application to protein subcellular location classification

(2011) C. Jackson et al.   BIOINFORMATICS

A data mining approach for classifying DNA repair genes into ageing-related or non-ageing-related

(2011) Alex A Freitas et al.   BMC GENOMICS

On Various Metrics Used for Validation of Predictive QSAR Models with Applications in Virtual Screening and Focused Library Design

(2011) Kunal Roy et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

The application of naive Bayes model averaging to predict Alzheimer's disease from genome-wide data

(2011) Wei Wei et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

NL MIND-BEST: A web server for ligands and proteins discovery—Theoretic-experimental study of proteins of Giardia lamblia and new compounds active against Plasmodium falciparum

(2011) Humberto González-Díaz et al.   JOURNAL OF THEORETICAL BIOLOGY

The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein–protein interaction mechanism

(2011) Guo-Ping Zhou   JOURNAL OF THEORETICAL BIOLOGY

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

MISS-Prot: web server for self/non-self discrimination of protein residue networks in parasites; theory and experiments in Fasciola peptides and Anisakis allergens

(2011) Humberto González-Díaz et al.   Molecular BioSystems

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites

(2011) Kuo-Chen Chou et al.   Molecular BioSystems

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

(2011) Kuo-Chen Chou et al.   PLoS One

QSAR Study on MHC Class I A Alleles Based on the Novel Parameters of Amino Acids

(2011) Juan Wang et al.   PROTEIN AND PEPTIDE LETTERS

3D-QSAR Study on a Series of Bcl-2 Protein Inhibitors Using Comparative Molecular Field Analysis

(2011) Xuben Hou et al.   PROTEIN AND PEPTIDE LETTERS

Combining Bayes Classification and Point Group Symmetry under Boolean Framework for Enhanced Protein Quaternary Structure Inference

(2011) Pralay Mitra et al.   STRUCTURE

Bayesian Inference for Genomic Data Integration Reduces Misclassification Rate in Predicting Protein-Protein Interactions

(2011) Chuanhua Xing et al.   PLoS Computational Biology

Graphic Rule for Drug Metabolism Systems

(2010) Kuo-Chen Chou   CURRENT DRUG METABOLISM

Drug Discovery and Design for Complex Diseases through QSAR Computational Methods

(2010) Cristian R. Munteanu et al.   CURRENT PHARMACEUTICAL DESIGN

MIND-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of MAO-B Inhibitors and Theoretical−Experimental Study of G3PDH Protein fromTrichomonas gallinae

(2010) Humberto González-Díaz et al.   JOURNAL OF PROTEOME RESEARCH

Prediction of human protein-protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk

(2010) Y. Xu et al.   Journal of the Royal Society Interface

2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids

(2010) Zhi-Cheng Wu et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions

(2010) Xuan Xiao et al.   Molecular BioSystems

Best Practices for QSAR Model Development, Validation, and Exploitation

(2010) Alexander Tropsha   Molecular Informatics

A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0

(2010) Kuo-Chen Chou et al.   PLoS One

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

SAR/QSAR methods in public health practice

(2010) Eugene Demchuk et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer

(2009) Santiago Vilar et al.   JOURNAL OF THEORETICAL BIOLOGY

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Plasmod-PPI: A web-server predicting complex biopolymer targets in plasmodium with entropy measures of protein–protein interactions

(2009) Yamilet Rodriguez-Soca et al.   POLYMER

Prediction of Protein Secondary Structure Content by Using the Concept of Chous Pseudo Amino Acid Composition and Support Vector Machine

(2009) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome–disease relationships (QPDRs) and predicting prostate cancer

(2008) Giulio Ferino et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Quantitative Proteome–Property Relationships (QPPRs). Part 1: Finding biomarkers of organic drugs with mean Markov connectivity indices of spiral networks of blood mass spectra

(2008) Maykel Cruz-Monteagudo et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Cancer Statistics, 2008

(2008) A. Jemal et al.   CA-A CANCER JOURNAL FOR CLINICIANS

3D-MEDNEs: An Alternative “in Silico” Technique for Chemical Research in Toxicology. 2. Quantitative Proteome−Toxicity Relationships (QPTR) based on Mass Spectrum Spiral Entropy

(2008) Maykel Cruz-Monteagudo et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Colorectal Cancer Risk Prediction Tool for White Men and Women Without Known Susceptibility

(2008) Andrew N. Freedman et al.   JOURNAL OF CLINICAL ONCOLOGY

Bond-based 3D-chiral linear indices: Theory and QSAR applications to central chirality codification

(2008) Juan A. Castillo-Garit et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

QSAR model for alignment-free prediction of human breast cancer biomarkers based on electrostatic potentials of protein pseudofolding HP-lattice networks

(2008) Santiago Vilar et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices

(2008) Cristian Robert Munteanu et al.   JOURNAL OF THEORETICAL BIOLOGY

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Stochastic molecular descriptors for polymers. 4. Study of complex mixtures with topological indices of mass spectra spiral and star networks: The blood proteome case

(2008) Maykel Cruz-Monteagudo et al.   POLYMER