DNA-centered approaches to characterize regulatory protein–DNA interaction complexes

Purification of Proteins Associated with Specific Genomic Loci

(2009) Jérôme Déjardin et al.   CELL

From DNA sequence to transcriptional behaviour: a quantitative approach

(2009) Eran Segal et al.   NATURE REVIEWS GENETICS

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors

(2009) John S. Reece-Hoyes et al.   NUCLEIC ACIDS RESEARCH

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

(2009) S. H. Meijsing et al.   SCIENCE

AhR/Arnt:XRE interaction: Turning false negatives into true positives in the modified yeast one-hybrid assay

(2008) Gang Chen et al.   ANALYTICAL BIOCHEMISTRY

DNA topology influences p53 sequence-specific DNA binding through structural transitions within the target sites

(2008) Eva B. Jagelská et al.   BIOCHEMICAL JOURNAL

Methods for studying global patterns of DNA binding by bacterial transcription factors and RNA polymerase

(2008) David C. Grainger et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Cracking the coregulator codes

(2008) Bert W O’Malley et al.   CURRENT OPINION IN CELL BIOLOGY

ChIPping away at gene regulation

(2008) Charles E Massie et al.   EMBO REPORTS

High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes

(2008) D. Tantin et al.   GENOME RESEARCH

A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements

(2008) G. Mittler et al.   GENOME RESEARCH

Structure of the intact PPAR-γ–RXR-α nuclear receptor complex on DNA

(2008) Vikas Chandra et al.   NATURE

DEAF-1 regulates immunity gene expression in Drosophila

(2008) D. E. Reed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA