Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.)

(2010) ChenJia Shen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.)

(2010) Yijun Wang et al.   MOLECULAR BIOLOGY REPORTS

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays)

(2010) Yan Liu et al.   PLANT GROWTH REGULATION

The life and death of gene families

(2009) Jeffery P. Demuth et al.   BIOESSAYS

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

(2009) Yidan Ouyang et al.   PLANT MOLECULAR BIOLOGY

Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis

(2009) Yaling Song et al.   PLANT MOLECULAR BIOLOGY

Evolution of the B3 DNA Binding Superfamily: New Insights into REM Family Gene Diversification

(2009) Elisson A. C. Romanel et al.   PLoS One

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Linking development to defense: auxin in plant–pathogen interactions

(2009) Kemal Kazan et al.   TRENDS IN PLANT SCIENCE

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2

(2008) G. Vert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The plant B3 superfamily

(2008) K SWAMINATHAN et al.   TRENDS IN PLANT SCIENCE

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology