Interspecific Variation in Rx1 Expression Controls Opsin Expression and Causes Visual System Diversity in African Cichlid Fishes

Selection and Adaptation in the Human Genome

(2013) Wenqing Fu et al.   Annual Review of Genomics and Human Genetics

The Population Genomics of Repeated Evolution in the Blind Cavefish Astyanax mexicanus

(2013) Martina Bradic et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Evolution of cichlid vision via trans-regulatory divergence

(2012) Kelly E O’Quin et al.   BMC EVOLUTIONARY BIOLOGY

ON THE SCENT OF STANDING VARIATION FOR SPECIATION: BEHAVIORAL EVIDENCE FOR NATIVE SYMPATRIC HOST RACES OF RHAGOLETIS POMONELLA (DIPTERA: TEPHRITIDAE) IN THE SOUTHERN UNITED STATES

(2012) Thomas H. Q. Powell et al.   EVOLUTION

EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE

(2012) Vera S. Domingues et al.   EVOLUTION

Correlation between Nuptial Colors and Visual Sensitivities Tuned by Opsins Leads to Species Richness in Sympatric Lake Victoria Cichlid Fishes

(2012) Ryutaro Miyagi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origins of Shared Genetic Variation in African Cichlids

(2012) Yong-Hwee E. Loh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

(2011) Kelly E O'Quin et al.   BMC EVOLUTIONARY BIOLOGY

An Essential Role for RAX Homeoprotein and NOTCH-HES Signaling in Otx2 Expression in Embryonic Retinal Photoreceptor Cell Fate Determination

(2011) Y. Muranishi et al.   JOURNAL OF NEUROSCIENCE

Craniofacial divergence and ongoing adaptation via the hedgehog pathway

(2011) Reade B. Roberts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of photoreceptor gene expression by the retinal homeobox (Rx) gene product

(2010) Yi Pan et al.   DEVELOPMENTAL BIOLOGY

Parallel Evolution of Opsin Gene Expression in African Cichlid Fishes

(2010) K. E. O'Quin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Retinal homeobox 1 is required for retinal neurogenesis and photoreceptor differentiation in embryonic zebrafish

(2009) Steve M. Nelson et al.   DEVELOPMENTAL BIOLOGY

Cichlid fish visual systems: mechanisms of spectral tuning

(2009) Karen CARLETON   Integrative Zoology

Adaptive Radiation: Contrasting Theory with Data

(2009) S. Gavrilets et al.   SCIENCE

Sexual Conflict Resolved by Invasion of a Novel Sex Determiner in Lake Malawi Cichlid Fishes

(2009) R. B. Roberts et al.   SCIENCE

The Eyes Have It: Regulatory and Structural Changes Both Underlie Cichlid Visual Pigment Diversity

(2009) Christopher M. Hofmann et al.   PLOS BIOLOGY

Evolution of Dim-Light and Color Vision Pigments

(2008) Shozo Yokoyama   Annual Review of Genomics and Human Genetics

The role of Xenopus Rx-L in photoreceptor cell determination

(2008) Hui-Yuan Wu et al.   DEVELOPMENTAL BIOLOGY

Identification ofcis-Acting Elements Repressing Blue Opsin Expression in Zebrafish UV Cones and Pineal Cells

(2008) Masaki Takechi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE

Molecular links among the causative genes for ocular malformation: Otx2 and Sox2 coregulate Rax expression

(2008) H. Danno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

(2008) Yong-Hwee E Loh et al.   GENOME BIOLOGY

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION