Genomic Landscape of Human, Bat, and Ex Vivo DNA Transposon Integrations

Regression Models for Count Data inR

(2015) Achim Zeileis et al.   Journal of Statistical Software

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

(2013) X. Zhuo et al.   JOURNAL OF VIROLOGY

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

(2012) Guruprasad Ananda et al.   Genome Biology and Evolution

Centromere Remodeling in Hoolock leuconedys (Hylobatidae) by a New Transposable Element Unique to the Gibbons

(2012) Lucia Carbone et al.   Genome Biology and Evolution

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

(2012) Arkarachai Fungtammasan et al.   GENOME RESEARCH

Characterization and functional annotation of nested transposable elements in eukaryotic genomes

(2012) Caihua Gao et al.   GENOMICS

Retargeting transposon insertions by the adeno-associated virus Rep protein

(2012) Ismahen Ammar et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: extensions and updates 2013

(2012) Laurence R. Meyer et al.   NUCLEIC ACIDS RESEARCH

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

(2012) R. Mitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture

(2012) X. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rescuing Alu: Recovery of New Inserts Shows LINE-1 Preserves Alu Activity through A-Tail Expansion

(2012) Bradley J. Wagstaff et al.   PLoS Genetics

A Hyperactive Transposase Promotes Persistent Gene Transfer of a piggyBac DNA Transposon

(2012) Erin R Burnight et al.   Molecular Therapy-Nucleic Acids

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

DNA sequence requirements for hobo transposable element transposition in Drosophila melanogaster

(2011) Yu Jung Kim et al.   GENETICA

TheDrosophilaGene Disruption Project: Progress Using Transposons With Distinctive Site Specificities

(2011) Hugo J. Bellen et al.   GENETICS

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

The UCSC Genome Browser database: extensions and updates 2011

(2011) T. R. Dreszer et al.   NUCLEIC ACIDS RESEARCH

Drosophila P elements preferentially transpose to replication origins

(2011) A. C. Spradling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The expanding universe of transposon technologies for gene and cell engineering

(2011) Zoltán Ivics et al.   Mobile DNA

Translating Sleeping Beauty transposition into cellular therapies: Victories and challenges

(2010) Zsuzsanna Izsvák et al.   BIOESSAYS

Single-Stranded DNA Transposition Is Coupled to Host Replication

(2010) Bao Ton-Hoang et al.   CELL

The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important

(2010) E. M. Kvikstad et al.   GENOME RESEARCH

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

(2010) T. Ryba et al.   GENOME RESEARCH

A Transposon and Transposase System for Human Application

(2010) Perry B Hackett et al.   MOLECULAR THERAPY

A role for host–parasite interactions in the horizontal transfer of transposons across phyla

(2010) Clément Gilbert et al.   NATURE

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes

(2010) R. Z. Cer et al.   NUCLEIC ACIDS RESEARCH

DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

(2010) S. Gangadharan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transposable element insertions have strongly affected human evolution

(2010) R. J. Britten   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Transposition into Replicating DNA Occurs through Interaction with the Processivity Factor

(2009) Adam R. Parks et al.   CELL

Non-B DNA structure-induced genetic instability and evolution

(2009) Junhua Zhao et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

(2009)   JOURNAL OF HEREDITY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

Centromere sequence and dynamics in Dictyostelium discoideum

(2009) Gernot Glöckner et al.   NUCLEIC ACIDS RESEARCH

Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements

(2009) Asaf Levy et al.   NUCLEIC ACIDS RESEARCH

Structure-based discovery and description of plant and animal Helitrons

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

(2008) D. A. Ray et al.   GENOME RESEARCH

Large inverted repeats in the vicinity of a single double-strand break strongly affect repair in yeast diploids lacking Rad51

(2008) Brandon Downing et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

(2008) Thomas A Down et al.   NATURE BIOTECHNOLOGY

Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element

(2008) Raquel S. Linheiro et al.   NUCLEIC ACIDS RESEARCH

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

(2008) J. K. Pace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endings in the middle: Current knowledge of interstitial telomeric sequences

(2007) Kah Wai Lin et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH