Cytonuclear Evolution of Rubisco in Four Allopolyploid Lineages

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

(2014) Hui Guo et al.   GENETICS

The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome

(2013) David J. Bertioli et al.   ANNALS OF BOTANY

Cytonuclear Genomic Interactions and Hybrid Breakdown

(2013) Ronald S. Burton et al.   Annual Review of Ecology Evolution and Systematics

Genetic and Epigenetic Aspects of Polyploid Evolution in Plants

(2013) A. Madlung et al.   CYTOGENETIC AND GENOME RESEARCH

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic expression dominance in allopolyploids

(2012) Ryan A Rapp et al.   BMC BIOLOGY

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

(2012) Lex E Flagel et al.   BMC GENOMICS

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

(2012) Janet Higgins et al.   BMC GENOMICS

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

(2012) Richard J.A. Buggs et al.   CURRENT BIOLOGY

Unravelling gene expression of complex crop genomes

(2012) R J A Buggs   HEREDITY

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

The Cytonuclear Dimension of Allopolyploid Evolution: An Example from Cotton Using Rubisco

(2012) L. Gong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Homoeolog expression bias and expression level dominance in allopolyploids

(2012) C. E. Grover et al.   NEW PHYTOLOGIST

The evolutionary ecology of cytonuclear interactions in angiosperms

(2012) Christina M. Caruso et al.   TRENDS IN PLANT SCIENCE

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

CYTONUCLEAR INTERACTIONS CAN FAVOR THE EVOLUTION OF GENOMIC IMPRINTING

(2009) Jason B. Wolf   EVOLUTION

Highly Conserved Small Subunit Residues Influence Rubisco Large Subunit Catalysis

(2009) Todor Genkov et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Homoeologous nonreciprocal recombination in polyploid cotton

(2009) Armel Salmon et al.   NEW PHYTOLOGIST

Arabidopsis thaliana Rubisco small subunit transit peptide increases the accumulation of Thermotoga maritima endoglucanase Cel5A in chloroplasts of transgenic tobacco plants

(2009) Suyeon Kim et al.   TRANSGENIC RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The Ups and Downs of Genome Size Evolution in Polyploid Species of Nicotiana (Solanaceae)

(2008) I. J. Leitch et al.   ANNALS OF BOTANY

Genomic Consequences of Outcrossing and Selfing in Plants

(2008) Stephen I. Wright et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio

(2008) M. J Hegarty et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES