Inheritance of Gene Expression Level and Selective Constraints on Trans- and Cis-Regulatory Changes in Yeast

Multivariate and Propensity Score Matching Software with Automated Balance Optimization: TheMatchingPackage forR

(2015) Jasjeet S. Sekhon   Journal of Statistical Software

Effects of cis and trans regulatory variations on the expression divergence of heat shock response genes between yeast strains

(2012) Ching-Min Li et al.   GENE

Conservation of replication timing reveals global and local regulation of replication origin activity

(2012) C. A. Muller et al.   GENOME RESEARCH

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS

(2012) Zia Khan et al.   Molecular Systems Biology

Promoter Nucleosome Organization Shapes the Evolution of Gene Expression

(2012) Dalia Rosin et al.   PLoS Genetics

Expression divergence measured by transcriptome sequencing of four yeast species

(2011) Michele A Busby et al.   BMC GENOMICS

Transcriptional Regulation and the Diversification of Metabolism in Wine Yeast Strains

(2011) Debra Rossouw et al.   GENETICS

Two types of cis-trans compensation in the evolution of transcriptional regulation

(2011) K. R. Takahasi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution inSaccharomyces cerevisiae

(2011) Paul M. Magwene et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

Natural selection on cis and trans regulation in yeasts

(2010) J. J. Emerson et al.   GENOME RESEARCH

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences

(2010) Itay Tirosh et al.   Molecular Systems Biology

The genetic basis of evolutionary change in gene expression levels

(2010) J. J. Emerson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

(2010) Alexander M. Tsankov et al.   PLOS BIOLOGY

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

(2009) Yair Field et al.   NATURE GENETICS

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

(2009) I. Tirosh et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Independent Effects of cis- and trans-regulatory Variation on Gene Expression in Drosophila melanogaster

(2008) P. J. Wittkopp et al.   GENETICS

Two strategies for gene regulation by promoter nucleosomes

(2008) I. Tirosh et al.   GENOME RESEARCH

Roles of cis- and trans-Changes in the Regulatory Evolution of Genes in the Gluconeogenic Pathway in Yeast

(2008) Y.-W. Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the relation between promoter divergence and gene expression evolution

(2008) Itay Tirosh et al.   Molecular Systems Biology

Regulatory changes underlying expression differences within and between Drosophila species

(2008) Patricia J Wittkopp et al.   NATURE GENETICS

Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression

(2008) B. Lemos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA